Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_F10
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.30 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = +1

Query: 475 GXXXPPGXGGWXXGXPPVPPPXXPXPPAVRXGGXXXAPPRXXIRXXPEPGDT 630
           G   PP   G     PP PPP    PPAV  GG     P       P+  +T
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAPQAEPEPKIDET 808



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +1

Query: 523 PVPPPXXPXPPAVRXGGXXXAPPRXXIRXXPEPGDTPGXTXXPXGXQR 666
           P P P    PPA   GG    PP   +     P   P       G  R
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 20/81 (24%), Positives = 20/81 (24%), Gaps = 1/81 (1%)
 Frame = +1

Query: 514  GXPPVPPPXXPXPPAVRXGGXXXAP-PRXXIRXXPEPGDTPGXTXXPXGXQRAGTXKKGX 690
            G PPVP P    PP     G    P P       P P   P                 G 
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178

Query: 691  VAGXXPXGPAPXXEXPKNXPP 753
                 P    P    P   PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPP 1199



 Score = 29.1 bits (62), Expect = 0.92
 Identities = 21/80 (26%), Positives = 25/80 (31%)
 Frame = +1

Query: 514  GXPPVPPPXXPXPPAVRXGGXXXAPPRXXIRXXPEPGDTPGXTXXPXGXQRAGTXKKGXV 693
            G PPVP P    PP     G     P+  +   P P  + G    P   + A        
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPV-PKPSVAAPPVPAPSSGIPPVP---KPAAGVPPVPP 1193

Query: 694  AGXXPXGPAPXXEXPKNXPP 753
                P  P P    P   PP
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPP 1213



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/89 (23%), Positives = 22/89 (24%)
 Frame = +1

Query: 487  PPGXGGWXXGXPPVPPPXXPXPPAVRXGGXXXAPPRXXIRXXPEPGDTPGXTXXPXGXQR 666
            P    G     PPVP P    P      G    P    I   P+P         P     
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112

Query: 667  AGTXKKGXVAGXXPXGPAPXXEXPKNXPP 753
                  G      P   AP    P   PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 514  GXPPVPPPXXPXPPAVRXGGXXXAPPRXXIRXXPEP 621
            G PPVPPP    P      G    PP       P P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/70 (25%), Positives = 23/70 (32%)
 Frame = +2

Query: 521  LPFPXPXXPXPRPSGGGXXXXPPQGXXSGXPXNRGIPREXPXDXXAXKGPGPXKRAXWXA 700
            +P P    P P+PS G     PP         + G+P        A   P P   A    
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP-SV 1249

Query: 701  XXPXAPPPXP 730
              P +  P P
Sbjct: 1250 STPRSSVPSP 1259


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 19/65 (29%), Positives = 24/65 (36%)
 Frame = +2

Query: 536 PXXPXPRPSGGGXXXXPPQGXXSGXPXNRGIPREXPXDXXAXKGPGPXKRAXWXAXXPXA 715
           P  P PR +  G    PPQG  +  P     PR  P      + P P   +   +  P  
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPP---PRSAP---STGRQPPPLSSSRAVSNPPAP 391

Query: 716 PPPXP 730
           PP  P
Sbjct: 392 PPAIP 396


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 554 GGXGXXGGGTGGXPXXQPPXPGG 486
           GG G  GGG+GG     PP PGG
Sbjct: 188 GGFGGFGGGSGG----PPPGPGG 206


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 520  PPVPPPXXPXPPAVRXGGXXXAPP 591
            P  PPP  P PP V   G     P
Sbjct: 942  PAFPPPPPPPPPLVSAAGGKFVSP 965


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,156
Number of Sequences: 5004
Number of extensions: 27600
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)