Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_F06
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 33 0.42
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 32 0.73
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 31 1.7
01_01_0401 + 3043634-3043894,3045610-3045849 31 1.7
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 30 2.2
03_05_0373 + 23581812-23583293 30 2.2
05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824 30 2.9
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 30 2.9
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 6.8
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 28 9.0
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 28 9.0
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 9.0
>07_03_1615 - 28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 32.7 bits (71), Expect = 0.42
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Frame = +3
Query: 342 RLRQESPGXRSETRT------ARPRRLWNXXXXXXXXXXXXXXXXXLXVEKNATALR--E 497
RLRQE+ G E R AR L + L ++ A A+
Sbjct: 715 RLRQEAMGIEREVRAVGDAMAARMVDLQSAADDIGAAAGRSLENQMLLLDGQAKAMEGLN 774
Query: 498 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK---IKAAYDDFAKNTQEVIKKIQEAA 668
L + +QES++ +K++ Q+ E+L + I+ A+DD KN++ ++ + QE
Sbjct: 775 HLYSFQAQALQESRETIQKLAQFGQQQQEELLSRQEQIRHAHDDLMKNSESIL-EAQEEF 833
Query: 669 NAKQ*ASI 692
AKQ ASI
Sbjct: 834 RAKQ-ASI 840
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.9 bits (69), Expect = 0.73
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3
Query: 437 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 279
P R SA T+ WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 99 PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 495 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 641
EKLQ + + QE+Q+L KK+SS V E +++ ++ + + A+ E
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEVASLKEALAQQEAE 200
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = -3
Query: 488 GGGVLLDVQGGPCGAPRPCARCSASTVP----KP---PWPCRSRLRALPWRLLAKALSCC 330
GGG + P +P A+C A VP +P P P R + L + C
Sbjct: 23 GGGGGKKLHQSPPPSPPEAAKCCADGVPVVMGEPLGAPAPPRESWNSGVLSCLGRNDEFC 82
Query: 329 STDSEPSFQALLKSC 285
S+D E SF+A K C
Sbjct: 83 SSDVEGSFEAFTKQC 97
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +3
Query: 483 TALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQE 662
TA E+L+A +Q T +++ + AKK + + NE+L K + A + + Q+ +++++E
Sbjct: 966 TAEVEQLKALLQ-TERQATETAKKEYAEAERRNEELIKKFEGA-EKKIEQLQDTVQRLEE 1023
Query: 663 AA 668
A
Sbjct: 1024 KA 1025
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 470 DVQGGPCGAPRPCARCSASTVPKPPW 393
D GG A +RCSAST PK PW
Sbjct: 53 DGAGGYGSAASSPSRCSASTPPKSPW 78
>05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824
Length = 200
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 486 ALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEA 665
A +EK QAA + + +Q K SS Q +K A + T++ +K E
Sbjct: 58 ATKEKAQAAKERASETAQAAKDKTSSTSQAARDKAAESKDQTGGFLGEKTEQAKQKAAET 117
Query: 666 ANA 674
A A
Sbjct: 118 AGA 120
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 492 REKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAAN 671
R LQ +Q +++ +A+K + + N+KL K+KA DD + ++ A
Sbjct: 337 RRLLQGEIQR-LRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTSASNKDNAT 395
Query: 672 AKQ 680
+KQ
Sbjct: 396 SKQ 398
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +3
Query: 471 EKNATALR-EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKA---AYDDFAKNTQ 638
EKNA L+ ++L+A ++N E ++ +VS+ +++ NE+L KI + ++ Q
Sbjct: 832 EKNAALLQVQQLEANLKNLESELEQKQSQVSA-LEQANEELREKISSLERQLEEARSKLQ 890
Query: 639 EVIKKIQ 659
+ I K+Q
Sbjct: 891 DEIIKLQ 897
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 468 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDD 620
+EK++ ++ E+ Q+ + Q+ +K AKKVSS E+ + K + Y +
Sbjct: 516 LEKSSKSILEETQSVGHTSQQKKRKKAKKVSSVDMESLDISGEKDQCGYGE 566
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 507 AAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 656
A TVQ + L +K+ SN+ + E+L + K + D+ + EVI+KI
Sbjct: 69 AFFSKTVQGAVDLIEKMVSNMGWSKERLQTRQKPSVDEQFAHFVEVIQKI 118
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 455 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 333
PC P P R ++T + PW R R + W L C
Sbjct: 26 PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,446
Number of Sequences: 37544
Number of extensions: 297101
Number of successful extensions: 1443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -