Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_F02
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646...    56   4e-08
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734...    56   5e-08
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36...    50   3e-06
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235     29   5.0  

>04_03_0156 -
           11963580-11963914,11964422-11964517,11964618-11964697,
           11965250-11965290,11965402-11965548,11965922-11966035,
           11968842-11968961,11969491-11969631,11969892-11970014,
           11970357-11970566
          Length = 468

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
 Frame = +2

Query: 368 YRCENHSLISQ-GYVLNIHRIPQARS-----GGDTPSNXVILQHGLFAXSXDWVLNGXGK 529
           Y CE H++ ++ GY+L++ RIP  R      GG      V+LQHGL      W++N   +
Sbjct: 64  YACEEHTVTTEDGYILSLQRIPSGRGETAAGGGGGGKVPVLLQHGLMMDGVTWLMNSPNE 123

Query: 530 XLTFVLAXAGXXVW 571
            L ++LA  G  VW
Sbjct: 124 SLGYILADNGYDVW 137


>08_02_1358 -
           26372559-26372887,26373183-26373262,26373287-26373420,
           26373546-26373689,26373809-26373919,26374165-26374305,
           26376839-26376964,26377072-26377263
          Length = 418

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
 Frame = +2

Query: 368 YRCENHSLISQ-GYVLNIHRIPQARSGGDTPSNX------VILQHGLFAXSXDWVLNGXG 526
           Y CE H + +Q GY+L + RIP+ R GG T          V+LQHG+      W+L    
Sbjct: 58  YPCEEHEVTTQDGYILGLQRIPRGRIGGVTGGGAAAARQPVLLQHGVLVDGMTWLLGSPE 117

Query: 527 KXLTFVLAXAGXXVW 571
           + L ++LA  G  VW
Sbjct: 118 ESLPYILADQGFDVW 132



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 601 RNXPFKXSSXQYWNXSWHEXAXXEXPXIIXY 693
           R+      S  YWN SW +    + P I+ Y
Sbjct: 144 RHVSLDPKSRSYWNWSWDDIVVNDMPAIVDY 174


>09_01_0014 +
           357398-357583,360213-360323,360520-360676,361067-361233,
           362012-362122,362206-362349,362436-362476,364134-364174,
           364175-364261,365402-365724
          Length = 455

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +2

Query: 368 YRCENHSLISQ-GYVLNIHRIPQARS-GGDTPSNXVILQHGLFAXSXDWVLNGXGKXLTF 541
           Y C  H++ ++ G++L++  IP  ++   D+    V LQHGLF     W +N   + L +
Sbjct: 56  YPCTEHNVETKDGFLLSLQHIPHGKNKAADSTGPPVFLQHGLFQGGDTWFINSAEQSLGY 115

Query: 542 VLAXAGXXVW 571
           +LA  G  VW
Sbjct: 116 ILADNGFDVW 125


>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
          Length = 416

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 248 CRRTHAFDDLSFLRFDEVTSGFRKXLTRLLELPNKSKPXDGDHA 117
           C R H  D+     FD+     RK L        KSKP DG+H+
Sbjct: 230 CSRFHLLDE-----FDDAKKSCRKRLADHNRRRRKSKPSDGEHS 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,705
Number of Sequences: 37544
Number of extensions: 261142
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)