Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_F01
         (1080 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 1074 PXAAAPPGXPXLPXSXXGSRPVPSPALARRGLP 976
            P   AP G P +P     + PVP P++A   +P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 1074 PXAAAPPGXPXLPXSXXGSRPVPSPALARRGLPXCAPLSGFGGXXXPS 931
            P   AP G P +P     + PVP+P+     +P   P +G      PS
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP--KPAAGVPPVPPPS 1195



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -1

Query: 1080 PXPXAAAPP-----GXPXLPXSXXGSRPVPSPA 997
            P P  AAPP     G P +P     + PVP+P+
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
 Frame = -1

Query: 1080 PXPXAAAPP------GXPXLPXSXXGSRPVPSPALA 991
            P P  AAPP      G P +P    G  PVP P+ A
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA 1197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 1080 PXPXAAAPPGXPXLPXSXXGSRPVPSPALARRGLPXCAPLS 958
            P P +  P   P LP S   S P+ +PA     LP  AP++
Sbjct: 418  PTPPSLPPSAPPSLPPSAPPSLPMGAPAAP--PLPPSAPIA 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.305    0.125    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,953
Number of Sequences: 5004
Number of extensions: 19413
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 567771870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)