Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_E23
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 234 1e-62
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 233 2e-62
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 217 1e-57
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.88
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 3.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 3.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 4.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.2
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 6.2
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 234 bits (572), Expect = 1e-62
Identities = 109/203 (53%), Positives = 145/203 (71%)
Frame = +3
Query: 219 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 398
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 399 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 578
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 579 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 758
+ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195
Query: 759 FTVGEKFKYASXXLWPFKLNNXL 827
+TVG FK A+ LWPFKL++ L
Sbjct: 196 YTVGPNFKQAANFLWPFKLSSPL 218
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 233 bits (570), Expect = 2e-62
Identities = 110/210 (52%), Positives = 148/210 (70%)
Frame = +3
Query: 198 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 377
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 378 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 557
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 558 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 737
AT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L K++I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189
Query: 738 EDLIHEIFTVGEKFKYASXXLWPFKLNNXL 827
EDLIHEI+TVG FK A+ +WPF+L++ L
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPFQLSSPL 219
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 217 bits (531), Expect = 1e-57
Identities = 98/199 (49%), Positives = 138/199 (69%)
Frame = +3
Query: 219 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 398
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 399 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 578
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 579 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 758
I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEI 194
Query: 759 FTVGEKFKYASXXLWPFKL 815
+ VG FK + LWPF L
Sbjct: 195 YNVGSHFKEVTKFLWPFTL 213
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 300 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 416
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 785 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 606
+L +F+ +D M L T+N + +L +A W TL G + F Y L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376
Query: 605 S 603
S
Sbjct: 377 S 377
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 850 MMFXCANTSXLFNLKGHRXXLAYLNFSPTVKISWMRSSTQIMLCLWSLFS 701
++F N +F L GH +AY+ +SP + + S + LW F+
Sbjct: 238 IIFDVVNLKRVFRLIGHIDTVAYIRWSPDDRY-LLSCSCDKSVILWDAFT 286
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 399 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 518
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -2
Query: 815 QFEGPQXXTRVLELFS------NSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLG 654
+F+ Q TR+L+LFS SED+ +LN D + + LL N + QL
Sbjct: 309 EFDVNQLETRILQLFSKVVQLCKSEDIEGSILNKD-MTQLHHLLENLSKESRLHILLQLS 367
Query: 653 ESTFVY 636
+ + Y
Sbjct: 368 QLYYKY 373
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 333 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 434
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 820 LFNLKGHRXXLAYLNFSPTVKISWMRSSTQIMLCLWSL 707
L L+GH + L +SP + SST +C+W L
Sbjct: 318 LHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,261
Number of Sequences: 5004
Number of extensions: 63978
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -