Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_E22
         (956 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.003
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.58 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 33.5 bits (73), Expect = 0.003
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 755 PXXPPPXPPPXSXPXPXPPXXXARPXPPXGXPXGPPPXAXP 877
           P    P P P     P  P   + P P  G P G PP A P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.6 bits (56), Expect = 0.33
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +2

Query: 752 PPXXPPPXPPPXSXPXPXPPXXXARPXPPXGXPXGPP 862
           P   P P   P +     PP     P PP G P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP-PPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 725 GLXXXPXRXPPXXPPPXPPPXSXP 796
           G    P + PP   PP  PP   P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +2

Query: 752 PPXXPPPXPPPXSXPXPXPPXXXARP 829
           P   PPP  PP + P   P      P
Sbjct: 42  PSQGPPPGGPPGAPPSQNPSQMMISP 67


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 861 GGPXGXPXGGXGRAXXXGGXGXGXDXGGGXGG 766
           GGP     GG       G    G + GGG GG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 752 PPXXPPPXPPPXS 790
           PP   PP PPP S
Sbjct: 338 PPKPAPPPPPPSS 350



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 752 PPXXPPPXPPPXSXP 796
           P   PPP PP  S P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 755 PXXPPPXPPPXSXPXP 802
           P  P P PPP S   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +2

Query: 746 RXPPXXPPPXPPPXSXPXPXPPXXXARPXPPXGXPXGPPPXAXPXXGXPXXR 901
           R  P   P    P   P P PP    R   P   P    P   P    P  R
Sbjct: 117 RREPEAEPGNNRPVYIPQPRPPHPRLR-REPEAEPGNNRPVYIPQPRPPHPR 167


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 764  PPPXPPPXS 790
            PPP PPP S
Sbjct: 1355 PPPPPPPPS 1363



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 764  PPPXPPPXS 790
            PPP PPP S
Sbjct: 1356 PPPPPPPSS 1364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,583
Number of Sequences: 438
Number of extensions: 5777
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)