Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_E19
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   3.3  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   5.8  
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.8  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 609  SGVSKIYIVFLADSNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMEHL 439
            SGV++I++  +  S    F    F   SYL   +D      I +  ++ + G M+ L
Sbjct: 1505 SGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFL 1561


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 133 VSVNESNYS-YQNYQLHCLLFSQR*EKQLKILRNSHIVRSVXG 8
           ++V ESN   Y N++  C+LF    +KQ++  R      S+ G
Sbjct: 202 ITVTESNLLVYFNFKKLCVLFDASFDKQIETFRLDFDFHSIIG 244



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 399 ICKEFACDKLQHLANV 446
           +CK   CD+L HL NV
Sbjct: 865 VCKAVRCDELMHLKNV 880


>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 556 TRLIAVGQKHDIYFANSAGYICTEN 630
           ++ + V Q  +IYFANS  Y+  EN
Sbjct: 124 SKTVLVRQLAEIYFANSNKYVVDEN 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,599
Number of Sequences: 5004
Number of extensions: 58074
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)