Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_E14
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.063
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 0.73
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.8
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 5.8
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 7.6
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect(2) = 0.063
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 24.6 bits (51), Expect(2) = 0.063
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 770 PPPPPPPXXXXXKK 729
PPPPPPP +K
Sbjct: 24 PPPPPPPGYVKKRK 37
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 0.73
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 773 PPPPPPP 753
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 0.73
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 770 PPPPPPP 750
PPPPPPP
Sbjct: 337 PPPPPPP 343
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 770 PPPPPPPXXXXXKK 729
PPPPPPP KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 773 PPPPPPPP 750
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -2
Query: 287 HCGTSHGPTWS---TKSWTSGFSQSGSAI 210
+ GT H P+WS + +W +G S G AI
Sbjct: 45 YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 190 NVHLSGIFSLENVAR*RNRQLPQ 122
N+H+SGI +LENV + QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -3
Query: 256 QRNRGLRDSHSPARPFEGNTELNVHLSGIFSLENVAR*RNRQLPQQTTNTNKT 98
++NR + ++ P+ F GN +L SG ++ + + ++ ++ N NKT
Sbjct: 41 RKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKV-KELENANKT 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,847
Number of Sequences: 5004
Number of extensions: 35850
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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