Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_E05
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   108   9e-25
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   3e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    44   2e-05
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   8.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  108 bits (260), Expect = 9e-25
 Identities = 59/129 (45%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
 Frame = +1

Query: 352 RRLYFSVV*KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 531
           RR   ++  K P       +TLDK TA  +FK+L KYRPET                   
Sbjct: 61  RRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGK 120

Query: 532 XXXXXXR-PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 708
                 + P  ++ G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IV
Sbjct: 121 SAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIV 180

Query: 709 KGKSRLGAL 735
           K K+RLG +
Sbjct: 181 KNKARLGTV 189



 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 37/55 (67%), Positives = 45/55 (81%)
 Frame = +3

Query: 240 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 404
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQF 78



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +2

Query: 740 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGG 877
           H+KT   LA+T V   D+   + +V A+  NF+ +Y+E R+ WGGG
Sbjct: 191 HQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGG 236


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +1

Query: 562 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 729
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 562 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 729
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLG 109


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 558 YHPIRHKHSHQAGREEEGAACGHR 629
           + P  HKH++    +EE  +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,292
Number of Sequences: 5004
Number of extensions: 56616
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)