Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_E05
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   112   4e-25
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   100   1e-21
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    97   2e-20
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    97   2e-20
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    42   8e-04
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    35   0.092

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  112 bits (269), Expect = 4e-25
 Identities = 54/119 (45%), Positives = 71/119 (59%)
 Frame = +1

Query: 379 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 558
           K P         LD  +A+  FK+L+KYRPE+                         RPN
Sbjct: 76  KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPN 135

Query: 559 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 735
           T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +
Sbjct: 136 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194



 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +3

Query: 240 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 404
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 30/71 (42%), Positives = 46/71 (64%)
 Frame = +2

Query: 665 CQRYAVKWAYHTALSRASPASVHLXHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 844
           C++Y V +A      +AS  +V    RKT   +AL +V   D+++ +K+VE +  NF+ER
Sbjct: 175 CRKYNVPYAI--IKGKASLGTV--VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 230

Query: 845 YEELRKHWGGG 877
           +EE+RKHWGGG
Sbjct: 231 HEEIRKHWGGG 241


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  100 bits (240), Expect = 1e-21
 Identities = 54/119 (45%), Positives = 71/119 (59%)
 Frame = +1

Query: 379 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 558
           K P         LD  +A+  FK+L+KYRPE+                         RPN
Sbjct: 76  KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK--------------------RPN 115

Query: 559 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 735
           T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +
Sbjct: 116 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174



 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +3

Query: 240 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 404
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 30/71 (42%), Positives = 46/71 (64%)
 Frame = +2

Query: 665 CQRYAVKWAYHTALSRASPASVHLXHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 844
           C++Y V +A      +AS  +V    RKT   +AL +V   D+++ +K+VE +  NF+ER
Sbjct: 155 CRKYNVPYAI--IKGKASLGTV--VRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 210

Query: 845 YEELRKHWGGG 877
           +EE+RKHWGGG
Sbjct: 211 HEEIRKHWGGG 221


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +3

Query: 240 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 404
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +3

Query: 240 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 404
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 379 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPET 474
           K P         LD  +A+  FK+L+KYRPE+
Sbjct: 179 KVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = +1

Query: 562 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 729
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +1

Query: 559 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 729
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -1

Query: 516 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCSG 406
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGG 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,828
Number of Sequences: 27780
Number of extensions: 338101
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)