Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_E02
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 28 7.5
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 28 7.5
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 28 7.5
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 9.9
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 9.9
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 9.9
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 28 9.9
AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical ... 28 9.9
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 482 SHVLSCVIXLILWITVLPPLSELIPLAA 399
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 482 SHVLSCVIXLILWITVLPPLSELIPLAA 399
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 482 SHVLSCVIXLILWITVLPPLSELIPLAA 399
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 476 VLSCVIXLILWITVLPPLSELIPLAA 399
+LS V+ L+L +LPP S IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 CNKQVNNNNCIHFMFQVQGEVWEVFSCINESA-NARGEAVCVL 347
CN++ NN C++ Q E++ + I + RG+ VC L
Sbjct: 551 CNQECNNEECLYDGLDCQSELFRCPAHIRKHCIERRGDGVCNL 593
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 CNKQVNNNNCIHFMFQVQGEVWEVFSCINESA-NARGEAVCVL 347
CN++ NN C++ Q E++ + I + RG+ VC L
Sbjct: 551 CNQECNNEECLYDGLDCQSELFRCPAHIRKHCIERRGDGVCNL 593
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 476 VLSCVIXLILWITVLPPLSELIPLAA 399
+LS V+ L+L +LPP S IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 476 VLSCVIXLILWITVLPPLSELIPLAA 399
+LS V+ L+L +LPP S IPL A
Sbjct: 277 LLSIVVFLLLVSKILPPTSSSIPLVA 302
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 CNKQVNNNNCIHFMFQVQGEVWEVFSCINESA-NARGEAVCVL 347
CN++ NN C++ Q E++ + I + RG+ VC L
Sbjct: 551 CNQECNNEECLYDGLDCQSELFRCPAHIRKHCIERRGDGVCNL 593
>AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical
protein Y24D9A.5 protein.
Length = 282
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 427 GGNTVIHRIRXITQERTCEQKASKRPGTVK 516
GG +V +R + Q+++ ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,970
Number of Sequences: 27780
Number of extensions: 373404
Number of successful extensions: 1016
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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