Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D24
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.3  

>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 436 NLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIY--N 609
           N+F  E++   Y C  +    + ++L+    Q F F    EI+ + F+ Q  P L+   N
Sbjct: 5   NVFRLEEKR--YKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRVFSFQKAPGLLILKN 62

Query: 610 YLSSVAQ 630
           Y+SS  Q
Sbjct: 63  YVSSELQ 69


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +1

Query: 433 FNLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIYNY 612
           F L     E +  NC   +   ++  +EN     F +Y S + Q+    L F+  LI++ 
Sbjct: 292 FTLIPTYQEVMASNCSKYDSTLMLTFIENHDLYRFPYYTSDQSQIMG-ALSFV--LIWDG 348

Query: 613 LSSVAQGKKKTY 648
           + S+  G+++ +
Sbjct: 349 IPSIFYGQEQGF 360


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 700 HLQLQSCICQLAMFLCT 650
           H   QSC CQ   F+C+
Sbjct: 625 HFSFQSCACQTLFFICS 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,563,350
Number of Sequences: 5004
Number of extensions: 72071
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)