Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D23
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.16 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.0  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   8.0  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 470 DAFLVKQIRFYLLYSHYSVYFFLFTSFAYSFIFTLKFHVILL 595
           D+ +V    F+  +S +S + FLFTS  ++F F L  H  LL
Sbjct: 101 DSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLL 142


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 493 SFLFIIQSL*CVFFFVHEFCLFVYFYFEISCDIINLL 603
           SFLF +  +  V+F       F++F+F   C  ++ L
Sbjct: 134 SFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFL 170


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 767 NINX*ITVSNAEVMNLFKCILALRDSTNIPVQGQACLGNSTIGM 636
           ++N  I V   EV  +FK    L+D+ N+P+   A   N  IGM
Sbjct: 698 HLNAIIDVDTWEVPEVFKW---LKDAGNVPISDMARTFNMGIGM 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,118
Number of Sequences: 5004
Number of extensions: 56624
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)