Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_D19
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 173 4e-44
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 162 5e-41
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 107 3e-24
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 83 7e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 74 2e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 74 2e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 70 4e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 70 4e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 69 7e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 67 4e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 65 1e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 1e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 3e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 59 9e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 59 9e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 58 2e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 57 3e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 57 4e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 55 1e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 2e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 7e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 42 1e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.49
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 2.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.6
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 2.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.5
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.6
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 27 4.6
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 6.1
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 8.1
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 8.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 8.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 8.1
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 173 bits (420), Expect = 4e-44
Identities = 80/107 (74%), Positives = 97/107 (90%)
Frame = +2
Query: 551 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 730
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 731 KCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIPRRALHANTIK 871
+CHACIGGT VR+D+ L++GVHVVVGTP RV+DMI RRAL + ++
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQ 163
Score = 82.2 bits (194), Expect = 9e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +1
Query: 394 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 543
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 162 bits (394), Expect = 5e-41
Identities = 78/109 (71%), Positives = 89/109 (81%)
Frame = +2
Query: 545 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 724
KGRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 725 NAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIPRRALHANTIK 871
N +CHACIGGT+V DI++L+ G HVV GTP RV DMI RR L +K
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVK 165
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +1
Query: 394 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 549
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +G
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG 58
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 107 bits (256), Expect = 3e-24
Identities = 51/100 (51%), Positives = 68/100 (68%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 715
+A GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLG 136
Query: 716 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDM 835
H+N K GGT +R+DI +L VH+VVGTP RV D+
Sbjct: 137 KHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDL 176
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +1
Query: 346 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 513
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 514 IQQRAIMPCIQG 549
IQ+ +I + G
Sbjct: 70 IQEESIPIALSG 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 82.6 bits (195), Expect = 7e-17
Identities = 43/113 (38%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 715
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Query: 716 DHLNAKCHACIGGTNVREDI-RQLESGVHVVVGTPXRVYDMIPRRALHANTIK 871
+ K +++ + + + +V+GTP V D++ RR L A IK
Sbjct: 209 KYTEVKT-----AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIK 256
Score = 43.6 bits (98), Expect = 4e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +1
Query: 433 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 531
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 74.1 bits (174), Expect = 2e-14
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Frame = +2
Query: 548 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 724
G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 725 NAKCHACIGGTNVREDI---RQLESGVHVVVGTPXRVYDMIPRRALHANTIK 871
+ + GG N+++D+ + H+VV TP R+ ++ + L N++K
Sbjct: 148 DVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVK 199
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +1
Query: 442 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGT 552
F D LK ELLR I GFE PS +QQ I I GT
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 74.1 bits (174), Expect = 2e-14
Identities = 41/98 (41%), Positives = 58/98 (59%)
Frame = +2
Query: 545 KGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 724
+GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +L
Sbjct: 43 EGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL 102
Query: 725 NAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMI 838
N K +GG ++ L HVVV TP R+ D+I
Sbjct: 103 NLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLI 140
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 70.1 bits (164), Expect = 4e-13
Identities = 36/94 (38%), Positives = 56/94 (59%)
Frame = +2
Query: 551 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 730
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 731 KCHACIGGTNVREDIRQLESGVHVVVGTPXRVYD 832
+ +GG ++ L HV+V TP R+ D
Sbjct: 144 RSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +1
Query: 298 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 477
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 478 GIYAYGFEKPSAIQQRAI 531
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 70.1 bits (164), Expect = 4e-13
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = +2
Query: 539 ASKGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 712
AS G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELI 215
Query: 713 GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIPRRALHAN 862
N + + GG V++ R L HVVV TP R++ +I L N
Sbjct: 216 KPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGN 265
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 69.3 bits (162), Expect = 7e-13
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Frame = +2
Query: 551 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVI 706
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 707 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIPRR 847
+ L +C + +GG E Q+ G H+VV TP R+ D + RR
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERR 393
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.9 bits (156), Expect = 4e-12
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIA 709
L +GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 102 LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKD 161
Query: 710 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIPRRALHANTIK 871
+ + A +GG ++ E L +VV TP R + L ++I+
Sbjct: 162 FSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIE 215
Score = 33.1 bits (72), Expect = 0.053
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 442 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 549
F M L + LLR I+ GF+ P+ IQ++ I ++G
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 706
LA G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 707 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYD 832
+ + CIGG +++ ++L +V+ TP R D
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Score = 32.7 bits (71), Expect = 0.070
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 439 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 603
+F MNL +L+G+ GFE P+ IQ + I + G ++ + K F+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFI 314
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 1e-10
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = +2
Query: 539 ASKGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVI 706
A KGRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 707 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMI 838
+G + IGG N +E+ +L S ++++V TP R+ I
Sbjct: 133 KIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHI 175
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.5 bits (140), Expect = 3e-10
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Frame = +2
Query: 542 SKGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVI 706
+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECK 512
Query: 707 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIPRRA 850
LN + GG +++ I L+ G +VV TP R+ D++ A
Sbjct: 513 PFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANA 560
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 418 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 555
D + V ++ L + + I + G+EKP++IQ +AI P I R
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 58.8 bits (136), Expect = 9e-10
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQK 697
LA +G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYN 106
Query: 698 VVIALGDHLNAKCHACIGGTNVREDIRQ--LESGVHVVVGTPXR 823
V+ L + TN + +++ L +V+ TP R
Sbjct: 107 VLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSR 150
Score = 34.7 bits (76), Expect = 0.017
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 436 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 549
+TF D NL L R I+ FEKP+++Q I ++G
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG 51
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.8 bits (136), Expect = 9e-10
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQ 694
L + +D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIY 233
Query: 695 KVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYD 832
V L + H C+ IGG + + ++ GV++++GTP R+ D
Sbjct: 234 NVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLAD 282
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 2e-09
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Frame = +2
Query: 548 GRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGD 718
GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ 261
Query: 719 HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMI 838
N K GG E R ++ V++GTP R+ D+I
Sbjct: 262 GTNLKAVVVYGGAPKSEQARAAKN-ASVIIGTPGRLLDLI 300
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 57.2 bits (132), Expect = 3e-09
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +2
Query: 548 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALG 715
GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 716 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYD 832
+ + IGG N R + +L GV+++V TP R+ D
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 433 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 603
+E F D+ L E + + I GFE + IQ+R+I P + G ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 56.8 bits (131), Expect = 4e-09
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKV 700
+A GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214
Query: 701 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMI 838
G + GG IR L GV + + TP R+ DM+
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDML 260
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 433 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 528
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 55.2 bits (127), Expect = 1e-08
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Frame = +2
Query: 536 LASKGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 661
+ + GRD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 662 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIP 841
APTREL QI + + A GG ++R IRQ++ G ++ TP R+ D+I
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLID 321
Query: 842 RRALHANTIK 871
R + IK
Sbjct: 322 RGRISLANIK 331
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +2
Query: 551 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQKVVIALGDHLN 727
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI + L +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
Query: 728 AK-CHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMI 838
K ++E +L + +GTP R+ I
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI 181
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 3e-06
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Frame = +2
Query: 542 SKGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGD 718
S G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 171 SYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMS 230
Query: 719 HLNAKCHACIGGTNVREDIRQL-----ESGVHVVVGTPXRVYDMI 838
+ A G ++R + QL E + V+V TP R+ D I
Sbjct: 231 GAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHI 275
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 7e-06
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Frame = +2
Query: 545 KGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL- 712
K +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V L
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELL 96
Query: 713 ---------GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMI 838
G L A + GT + E VV+GTP R+ +M+
Sbjct: 97 AYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEML 147
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.9 bits (94), Expect = 1e-04
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Frame = +2
Query: 554 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGD 718
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI + L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTY 137
Query: 719 HLNAKCHACIGG-TNVREDIRQLESGVHVVVGTPXRVYD 832
+ IGG + +RE+ ++++ TP R+ D
Sbjct: 138 GTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.9 bits (64), Expect = 0.49
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 548 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVI 706
G VI + +GK+ + I ILQ + + A + PT+ LAQ +K +I
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLI 377
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 406 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 498
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 578 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 694
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 409 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 543
LDT+W V + NL+ + + I + F PS I + MP +
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSL 228
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 610 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 711
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 383 DLREWTLGHLTPT 421
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 784 QLANIFTDIXAT---NASMAFSIQVITKSYHHLLNLL 683
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 724 QVITKSYHHLLNLLGQLSCGSQDQ 653
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 689 IQKVVIALGDHLNAKCHACIGGTNVRED 772
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +2
Query: 656 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 814
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +2
Query: 554 DVIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPTRELAQQIQKVVIA 709
+++ A +G GKT + IL ++ +RE + + +AP + L Q++
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 710 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPXRVYDMIPRRA 850
N + G + + +Q S ++V TP + +D+I R+A
Sbjct: 597 RLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKA 639
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 403 QGPFPEVHRNYLDPSMAHFWNPLANL 326
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,216
Number of Sequences: 5004
Number of extensions: 65178
Number of successful extensions: 214
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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