Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D15
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   1.2  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    28   1.6  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   2.7  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   2.7  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   3.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.3  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    26   6.3  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   6.3  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   8.3  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -1

Query: 868 LRSLQTAPK*AASCTRVVVGQGLSTSSAYQTSSTRLKSVCLRNQQWHQKFPYTSVPGCTT 689
           L S+ +    +AS T +      ++++A  TSST L SV           P TSV   T 
Sbjct: 308 LTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTA 367

Query: 688 FDSMAFGEDILFNTSATD-THTPSTS 614
             + +     + +TSAT  + TP TS
Sbjct: 368 TSASSTPLTSVNSTSATSASSTPLTS 393


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 178 NHSIINDKFHRIFFSRSVVLLRSIFRDKKCV 86
           N  +  D  H + + R + LLRS+ + K+C+
Sbjct: 95  NSKLSEDPTHTVIYKRKLALLRSMGQTKECI 125


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 268 KNSKKIQTVPCILPHFVI*SLNHCTVCKRSNHSIINDKFHRIFFS 134
           +N+ ++  V C L HF+  S N  +V     H       H IFFS
Sbjct: 39  ENTNRLSEVQCKLTHFLSSSENSSSVRNTRTHK-FKQLLHYIFFS 82


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 740 SAMASKIPLYFSTGVYNIRFYGFWRRYTFQHICYRHPYTLHFLLYTK 600
           S  A  I +  S  V+++    F R+++ + I   HP+ LH  + TK
Sbjct: 16  SDYAVLIAISLSYFVFDVLMLPFTRQFSLEDITISHPFALHEQVPTK 62


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 449 ESRLALEKWKQERISEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQPR*PASYREG 616
           E+RL ++  K +RI    V      Y+   + G+   +T+     +PR    YR+G
Sbjct: 226 ETRLTMQILKADRIFSTCVANTVHAYEGLFSSGSNIDSTIATLVLEPRDLIVYRKG 281


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 805  GLSTSSAYQTSSTRLKSVCLRNQQWHQKFPYTSVPGCTTFDSMAFGEDILFNTSATDTHT 626
            G S++  Y TSST+ +   +    ++    YTS P   T  S    E     ++     +
Sbjct: 1439 GESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIYQGS 1498

Query: 625  PSTSFS-IRSW 596
             ++++S +R W
Sbjct: 1499 GTSTWSTVRQW 1509


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 362  KILQIKHHRNDYAEQYPSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRF 523
            K+ Q +  +N Y +  P  T   N+T++  S+LA E  KQ+  S+  +E+   +
Sbjct: 1090 KLFQAEDTKNSYDQTSPEATQERNRTIS--SKLA-EMEKQKNESKAALEQMKNY 1140


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = -1

Query: 838 AASCTRVVVGQGLSTSSAYQTSSTRLKSVCLRNQQWHQKFPYTSVPGC---TTFDSMAFG 668
           A+     ++ QG      Y+    +L  +     +W +K  +  VP C     +   A G
Sbjct: 15  ASHSAEALLSQGYRVRGTYRFQE-KLDGLLKNRPEWEKKVEFVQVPDCRAPNAYVEAAKG 73

Query: 667 EDILFNTSATDTHT 626
            D + + +AT+ H+
Sbjct: 74  VDYVIH-AATEVHS 86


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 569 LKCCETWYQLPFELGKIY*ILQLPFRK 489
           LK  E++++ P E+ K   IL+LP RK
Sbjct: 110 LKSHESYWEPPLEISKDLKILRLPIRK 136


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 465 WRS-GNKSGFPKWELKNLIDFTKLKWQLV-PSFT 560
           WR  G+K G  +W+LK   ++ +L  Q V PS T
Sbjct: 852 WRKMGSKIGTSEWDLKGGEEYVELMQQYVRPSLT 885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,682,261
Number of Sequences: 5004
Number of extensions: 80666
Number of successful extensions: 233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)