Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D14
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    98   2e-21
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    81   2e-16
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    64   2e-11
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   3.5  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   6.1  
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.1  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   8.1  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +3

Query: 522 VIWLQGGPGASSLTSLFNEIGPYKVTHKGNLLPY-PHTWLQNHSLVFIDNPIGTGFSFTD 698
           V+WL GGPG SSLT LF E+GP  +  +     Y PH+W  N S++F+D PI TGFS   
Sbjct: 618 VLWLNGGPGCSSLTGLFMELGPSSINIETLKPEYNPHSWNSNASVIFLDQPINTGFS--- 674

Query: 699 SEDGYVHDMDTYGHHLYLTVKQLVTVFPELQTAPLYVAGESYAGKYVPALAMQLHRH 869
           + D  V D  T G  +Y  +      FP+      ++AGESYAG Y+P  A ++  H
Sbjct: 675 NGDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFHIAGESYAGHYIPQFAKEIMEH 731


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 35/113 (30%), Positives = 66/113 (58%)
 Frame = +3

Query: 522 VIWLQGGPGASSLTSLFNEIGPYKVTHKGNLLPYPHTWLQNHSLVFIDNPIGTGFSFTDS 701
           ++WL GGPG SS      E+GP+++         P  W +  +L+F+D P+GTG+S++ +
Sbjct: 77  ILWLNGGPGCSSEDGSLMEVGPFRLDDNNTFQLNPGRWDELGNLLFVDQPLGTGYSYSLA 136

Query: 702 EDGYVHDMDTYGHHLYLTVKQLVTVFPELQTAPLYVAGESYAGKYVPALAMQL 860
           +D +  + +   +   +  ++ +  FPE      ++AGES+AG+Y+P +A +L
Sbjct: 137 KD-FQSNNEKMANDFSIFFEKFLEEFPERANDEWFIAGESFAGQYIPHIAAKL 188


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = +3

Query: 519 WVIWLQGGPGASSLTSLFNEIGPYKVTHKG-NLLPYPHTWLQNHSLVFIDNPIGTGFSFT 695
           +++WLQGGPG +     F+E GP +++    +    P +W    +++++D P GTG+S  
Sbjct: 101 FIVWLQGGPGCAGTLGFFSENGPIEISQSSPSPSLNPESWTNFANMLWLDQPFGTGYS-- 158

Query: 696 DSEDGYVHDMDTYGHHLYLTVKQLVTVFPELQTAPLYVAGESY 824
             +  Y   ++         +K     FP L    LY+ GESY
Sbjct: 159 QGQAAYTTTIEEASSDFVNALKSFYQKFPHLMKKKLYLVGESY 201


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 610 IYCLTPTRGCKITRWCSSTTPSGLGSVL 693
           I CL+    C + +W SS+ P+ + S L
Sbjct: 19  IICLSNLPNCPLDQWDSSSVPASISSTL 46


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 182 SVCCKVAVKDKSTKSLNSLED--SKVKELKNDENQDEETPATDTPKVDNGV 328
           S+  K A +D +  SL S E+   +V           E+P TDTP+  NG+
Sbjct: 361 SISLKFAPEDTAHNSLTSQENVGPQVTTTSLSNMTVAESPRTDTPREINGL 411


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 675 GTGFSFTDSEDGYVHDMDTYGHH 743
           G  F FTD  +GY   +DTY +H
Sbjct: 116 GPVFGFTDKFNGYGIFIDTYNNH 138


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 648 SLVFIDNPIGTGFSFTDSEDGYVHDMDTYGHHLYLTVKQLVTVFPELQTAPL 803
           ++V  D  +  GF   D E   ++++D+Y   L  + KQ +    E+  A L
Sbjct: 219 TIVRTDIALACGFQPRDEEGQQIYELDSYTSPLVSSPKQCLIGTAEISLAAL 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,745
Number of Sequences: 5004
Number of extensions: 62587
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)