Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D14
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 567 LFNEI-GPYKVTHKGNLLPYPH 629
           LFN   G Y+V +K N+L YP+
Sbjct: 115 LFNNADGNYEVRYKSNVLIYPN 136


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 708 GYVHDMDTYGHHLYLTVKQLVTV 776
           GYV  +D+YG+H+ L  KQ + V
Sbjct: 340 GYV--VDSYGNHVKLYTKQGLNV 360


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 708 GYVHDMDTYGHHLYLTVKQLVTV 776
           GYV  +D+YG+H+ L  KQ + V
Sbjct: 340 GYV--VDSYGNHVKLYTKQGLNV 360


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +3

Query: 714 VHDMDTYGHHLYLTVKQLVTVFPELQTAPLYVAGESYAGKYVP 842
           +H+ + Y ++ Y   K+L      ++  P+ +    Y G + P
Sbjct: 90  IHNNNNYNNNNYNNYKKLYYNINYIEQVPVPIPVPIYCGNFPP 132


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 727 IRMVTTCT*Q*SNW*QCFRNCKLHHCMWPESHTLVNTF 840
           ++ V  C    S+W      C+++   W  S   VN F
Sbjct: 163 VKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEEVNIF 200


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = -2

Query: 844 AGTY-LPAYDSPAT---YN-GAVCNSGNTVTSCF 758
           +G Y +PA+  P +   Y+ GAV   G TV  CF
Sbjct: 438 SGEYEIPAHGLPPSATRYDLGAVATVGTTVAPCF 471


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 804 YVAGESYAGKYVPALAMQLH 863
           +V G+ Y GKY+   + +LH
Sbjct: 147 FVPGDDYDGKYLVLPSGELH 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,239
Number of Sequences: 438
Number of extensions: 4336
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)