Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D13
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   127   9e-30
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    95   6e-20
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    95   6e-20
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   7.7  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  127 bits (307), Expect = 9e-30
 Identities = 57/105 (54%), Positives = 82/105 (78%)
 Frame = +3

Query: 192 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 371
           P +KELR K  ++++PIR DDEV V+RG +KG   G+V++ YRKKFV++I++I REKANG
Sbjct: 33  PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91

Query: 372 ATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 506
           +T ++GIHPSK  I KLK++KDR+A+++R+A GR    G  KGK+
Sbjct: 92  STVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLX*GTKTK 217
           MK N  V+S   K+RK HF+APSH RR +MS+PL    +TK
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 95.1 bits (226), Expect = 6e-20
 Identities = 41/71 (57%), Positives = 58/71 (81%)
 Frame = +3

Query: 192 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 371
           P +KELR K  ++++PIR DDEV V+RG +KG   G+V++ YRKKFV++I++I REKANG
Sbjct: 33  PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91

Query: 372 ATAYVGIHPSK 404
           +T ++GIHPSK
Sbjct: 92  STVHIGIHPSK 102



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLX*GTKTK 217
           MK N  V+S   K+RK HF+APSH RR +MS+PL    +TK
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 95.1 bits (226), Expect = 6e-20
 Identities = 41/71 (57%), Positives = 58/71 (81%)
 Frame = +3

Query: 192 PXSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 371
           P +KELR K  ++++PIR DDEV V+RG +KG   G+V++ YRKKFV++I++I REKANG
Sbjct: 33  PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91

Query: 372 ATAYVGIHPSK 404
           +T ++GIHPSK
Sbjct: 92  STVHIGIHPSK 102



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLX*GTKTK 217
           MK N  V+S   K+RK HF+APSH RR +MS+PL    +TK
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 576 FKNFIYLKNYLFKRPPWLWQFPRCI 502
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,502
Number of Sequences: 27780
Number of extensions: 299769
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)