Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_D12
(907 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 204 1e-53
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 185 9e-48
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 121 1e-28
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 104 2e-23
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 89 6e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 87 2e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 86 7e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 84 2e-17
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 83 4e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 82 9e-17
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 82 1e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 77 3e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 77 5e-15
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 76 8e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 75 1e-14
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 75 1e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 74 2e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 72 1e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 69 9e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 62 8e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 62 1e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 61 2e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 59 1e-09
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.010
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 33 0.042
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.52
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 2.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.8
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 2.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.7
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 4.8
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 4.8
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 6.4
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 6.4
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 8.5
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 8.5
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 8.5
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 8.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 204 bits (499), Expect = 1e-53
Identities = 95/122 (77%), Positives = 113/122 (92%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 509
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 510 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 689
+CHACIGGT VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDEADEMLSR
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR 176
Query: 690 GF 695
GF
Sbjct: 177 GF 178
Score = 82.2 bits (194), Expect = 9e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +2
Query: 173 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 322
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
Score = 56.8 bits (131), Expect = 4e-09
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = +1
Query: 700 DQIHDVFKMLSADVQVILLSATMPDDVLESISMLYERSCTHTCTEGRAYPGKVLNXFYIA 879
DQI+D+F++L QV+LLSATMP DVLE ++ + R + + + FY+A
Sbjct: 180 DQIYDIFQLLPPTAQVVLLSATMPQDVLE-VTTKFMRDPIRILVKKDELTLEGIKQFYVA 238
Query: 880 IELXEWKLE 906
+E EWKL+
Sbjct: 239 VEKEEWKLD 247
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 185 bits (450), Expect = 9e-48
Identities = 87/124 (70%), Positives = 103/124 (83%)
Frame = +3
Query: 324 KXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 503
K RDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 504 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 683
N +CHACIGGT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDEADE+L
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELL 176
Query: 684 SRGF 695
++GF
Sbjct: 177 NQGF 180
Score = 59.7 bits (138), Expect = 6e-10
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +2
Query: 173 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 328
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +G
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG 58
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/69 (30%), Positives = 40/69 (57%)
Frame = +1
Query: 700 DQIHDVFKMLSADVQVILLSATMPDDVLESISMLYERSCTHTCTEGRAYPGKVLNXFYIA 879
+QI+D+++ L QV+++SAT+P DVLE ++ + + + + L ++IA
Sbjct: 182 EQIYDIYRYLPPGTQVVVVSATLPQDVLE-MTNKFTTNPVRILVKRDELTLEGLKQYFIA 240
Query: 880 IELXEWKLE 906
+E EWK +
Sbjct: 241 VEKEEWKFD 249
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 121 bits (292), Expect = 1e-28
Identities = 60/127 (47%), Positives = 82/127 (64%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 494
+A RD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLG 136
Query: 495 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEAD 674
H+N K GGT +R+DI +L VH+VVGTPGRV D+ + + FV+DEAD
Sbjct: 137 KHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEAD 196
Query: 675 EMLSRGF 695
++LS F
Sbjct: 197 KLLSPEF 203
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +2
Query: 125 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 292
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 293 IQQRAIMPCIQG 328
IQ+ +I + G
Sbjct: 70 IQEESIPIALSG 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 104 bits (249), Expect = 2e-23
Identities = 53/126 (42%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 494
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Query: 495 DHLNAKCHACIGGTNVREDI-RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEA 671
+ K +++ + + + +V+GTPG V D++ RR L A IK+FVLDEA
Sbjct: 209 KYTEVKT-----AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEA 263
Query: 672 DEMLSR 689
D ML +
Sbjct: 264 DNMLDQ 269
Score = 43.6 bits (98), Expect = 4e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +2
Query: 212 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 310
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 89.4 bits (212), Expect = 6e-19
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Frame = +3
Query: 333 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 509
DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L +
Sbjct: 90 DVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDV 149
Query: 510 KCHACIGGTNVREDI---RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 680
+ GG N+++D+ + H+VV TPGR+ ++ + L N++K FVLDE D++
Sbjct: 150 RTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKL 209
Query: 681 L 683
L
Sbjct: 210 L 210
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +2
Query: 221 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGT 331
F D LK ELLR I GFE PS +QQ I I GT
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 87.4 bits (207), Expect = 2e-18
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVI 485
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 486 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 665
+ L +C + +GG E Q+ G H+VV TPGR+ D + RR + V+D
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMD 406
Query: 666 EADEMLSRGF 695
EAD ML GF
Sbjct: 407 EADRMLDMGF 416
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 85.8 bits (203), Expect = 7e-18
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 509
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 510 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLS 686
+ +GG ++ L HV+V TPGR+ D + + +K ++DEAD +L
Sbjct: 144 RSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD 203
Query: 687 RGFXGP 704
F GP
Sbjct: 204 MDF-GP 208
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +2
Query: 77 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 256
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 257 GIYAYGFEKPSAIQQRAI 310
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 84.2 bits (199), Expect = 2e-17
Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 509
R+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +LN
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNL 104
Query: 510 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADE 677
K +GG ++ L HVVV TPGR+ D+I IK V+DEAD
Sbjct: 105 KHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADR 164
Query: 678 MLSRGF 695
+LS F
Sbjct: 165 LLSPTF 170
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 83.4 bits (197), Expect = 4e-17
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Frame = +3
Query: 318 ASKXRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 491
AS D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELI 215
Query: 492 GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLD 665
N + + GG V++ R L HVVV TPGR++ +I L N IK VLD
Sbjct: 216 KPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLD 275
Query: 666 EADEMLSR 689
EAD +L +
Sbjct: 276 EADRLLQK 283
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 82.2 bits (194), Expect = 9e-17
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIA 488
L + RDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 102 LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKD 161
Query: 489 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDE 668
+ + A +GG ++ E L +VV TPGR + L ++I+ V DE
Sbjct: 162 FSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDE 221
Query: 669 ADEMLSRGF 695
AD + GF
Sbjct: 222 ADRLFEMGF 230
Score = 34.3 bits (75), Expect = 0.024
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +2
Query: 26 IGNSLRFAFPFSYCG*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPG--TLDTD 199
I NSL+ AFP N E E N +D G+Y ++ T
Sbjct: 12 ISNSLK-AFPVDIATDNQKDKHENVGE-------NVSDEDDGNYIASKLLESNRRTKGKK 63
Query: 200 WDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 328
+ F M L + LLR I+ GF+ P+ IQ++ I ++G
Sbjct: 64 GNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 81.8 bits (193), Expect = 1e-16
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 485
LA +D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 486 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVL 662
+ + CIGG +++ ++L +V+ TPGR D M + I++ V+
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVM 411
Query: 663 DEADEMLSRGF 695
DEAD ML GF
Sbjct: 412 DEADRMLEDGF 422
Score = 32.7 bits (71), Expect = 0.074
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 218 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 382
+F MNL +L+G+ GFE P+ IQ + I + G ++ + K F+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFI 314
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 77.0 bits (181), Expect = 3e-15
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDH 500
RDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQG 262
Query: 501 LNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 680
N K GG E R ++ V++GTPGR+ D+I ++ + + VLDEAD M
Sbjct: 263 TNLKAVVVYGGAPKSEQARAAKNA-SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRM 321
Query: 681 LSRGF 695
L GF
Sbjct: 322 LDTGF 326
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 76.6 bits (180), Expect = 5e-15
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQ 473
L + +D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIY 233
Query: 474 KVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHA 638
V L + H C+ IGG + + ++ GV++++GTPGR+ D + AL
Sbjct: 234 NVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDV 292
Query: 639 NTIKLFVLDEADEMLSRGF 695
+ ++ VLDE D ++ GF
Sbjct: 293 SQVRWVVLDEGDRLMDMGF 311
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 75.8 bits (178), Expect = 8e-15
Identities = 43/131 (32%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Frame = +3
Query: 318 ASKXRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVI 485
A K RD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 486 ALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVL 662
+G + IGG N +E+ +L S ++++V TPGR+ I + + +++ +L
Sbjct: 133 KIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLIL 191
Query: 663 DEADEMLSRGF 695
DEAD +L GF
Sbjct: 192 DEADRILDMGF 202
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 74.9 bits (176), Expect = 1e-14
Identities = 54/145 (37%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 440
+ + RD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 441 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMIT 620
APTREL QI + + A GG ++R IRQ++ G ++ TPGR+ D+I
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLID 321
Query: 621 RRALHANTIKLFVLDEADEMLSRGF 695
R + IK VLDEAD ML GF
Sbjct: 322 RGRISLANIKFLVLDEADRMLDMGF 346
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 74.9 bits (176), Expect = 1e-14
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKV 479
+A RD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214
Query: 480 VIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFV 659
G + GG IR L GV + + TPGR+ DM+ + + V
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLV 274
Query: 660 LDEADEMLSRGF 695
LDEAD ML GF
Sbjct: 275 LDEADRMLDMGF 286
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 212 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 307
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 74.1 bits (174), Expect = 2e-14
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 8/135 (5%)
Frame = +3
Query: 315 LASKXRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQK 476
LA + +D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYN 106
Query: 477 VVIALGDHLNAKCHACIGGTNVREDIRQ--LESGVHVVVGTPGRVYDMITRRALHANTIK 650
V+ L + TN + +++ L +V+ TP R + L + +K
Sbjct: 107 VLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLK 166
Query: 651 LFVLDEADEMLSRGF 695
V+DEAD MLS G+
Sbjct: 167 FLVIDEADLMLSFGY 181
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 215 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 328
+TF D NL L R I+ FEKP+++Q I ++G
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG 51
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 71.7 bits (168), Expect = 1e-13
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATFSISILQQIDTS--IRECQ---ALILAPTRELAQQIQKVVIALG 494
RDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 495 DHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLD 665
LN + GG +++ I L+ G +VV TPGR+ D+++ R + + VLD
Sbjct: 516 KLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLD 575
Query: 666 EADEMLSRGF 695
EAD M GF
Sbjct: 576 EADRMFDLGF 585
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 197 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 334
D + V ++ L + + I + G+EKP++IQ +AI P I R
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 68.9 bits (161), Expect = 9e-13
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGD 497
RDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLK 186
Query: 498 HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 674
+ + IGG N R + +L GV+++V TPGR+ D + + ++ V+DEAD
Sbjct: 187 YHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEAD 246
Query: 675 EMLSRGF 695
+L GF
Sbjct: 247 RILEIGF 253
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 212 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 382
+E F D+ L E + + I GFE + IQ+R+I P + G ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 62.5 bits (145), Expect = 8e-11
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Frame = +3
Query: 324 KXRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL- 491
K +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V L
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELL 96
Query: 492 ---------GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANT 644
G L A + GT + E VV+GTPGR+ +M++ + +
Sbjct: 97 AYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKH 154
Query: 645 IKLFVLDEADEMLSRGF 695
+++ +LDEAD ++ GF
Sbjct: 155 LEILILDEADTLIDMGF 171
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 62.1 bits (144), Expect = 1e-10
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Frame = +3
Query: 330 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQKVVIALGDHLN 506
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI + L +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
Query: 507 AK-CHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 683
K ++E +L + +GTP R+ I + L ++ FV+DEAD +
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLF 202
Query: 684 SRGF 695
GF
Sbjct: 203 EPGF 206
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 60.9 bits (141), Expect = 2e-10
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Frame = +3
Query: 333 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGD 497
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI + L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTY 137
Query: 498 HLNAKCHACIGG-TNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEA 671
+ IGG + +RE+ ++++ TPGR+ D + R L + + F+LDEA
Sbjct: 138 GTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEA 197
Query: 672 DEMLSRGF 695
D ++ GF
Sbjct: 198 DRLMDMGF 205
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 58.8 bits (136), Expect = 1e-09
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Frame = +3
Query: 333 DVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNA 509
DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 175 DVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGL 234
Query: 510 KCHACIGGTNVREDIRQL-----ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEA 671
+ A G ++R + QL E + V+V TPGR+ D I + ++ V+DEA
Sbjct: 235 QVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEA 294
Query: 672 DEMLSRGF 695
D +L + F
Sbjct: 295 DRLLDQSF 302
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.5 bits (78), Expect = 0.010
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Frame = +3
Query: 336 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL---- 503
VI + +GK+ + I ILQ + + A + PT+ LAQ +K +I + ++
Sbjct: 329 VIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLK 387
Query: 504 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA----LHANTIKLFVLDEA 671
N + G T + E + +++ P ++ I A +KLFVLDEA
Sbjct: 388 NIRVDTFDGDTPL-ESRESIIRSANIIFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 33.5 bits (73), Expect = 0.042
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Frame = +3
Query: 333 DVIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPTRELAQQIQKVVIA 488
+++ A +G GKT + IL ++ +RE + + +AP + L Q++
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 489 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA---LHANTIKLFV 659
N + G + + +Q S ++V TP + +D+ITR+A + N ++L +
Sbjct: 597 RLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKANDLSYVNLVRLVI 652
Query: 660 LDE 668
+DE
Sbjct: 653 IDE 655
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 513 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 680
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 185 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 277
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 357 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 473
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 188 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 322
LDT+W V + NL+ + + I + F PS I + MP +
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSL 228
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 389 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 490
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 468 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANT 644
++ + A+ DHL+ + CIG N+ ED VH + T G+ ++T H++
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSV 187
Query: 645 IK 650
I+
Sbjct: 188 IQ 189
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 162 DLREWTLGHLTPT 200
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 4.8
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +3
Query: 402 IDTSIRECQALILAPTR-ELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGV 575
+D IR+ A+ +P +LA + + D H +++ D+R +ESGV
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGV 404
Query: 576 HVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSRGF 695
+ + T G YD + L+ + IK V E M G+
Sbjct: 405 NRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGY 444
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 503 QVITKSYHHLLNLLGQLSCGSQDQ 432
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 803 MRDPVRILVQKEELTLERY 859
M++P+R+ + EE T++RY
Sbjct: 136 MKEPIRLFGESEEATIQRY 154
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +3
Query: 435 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 593
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 563 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 462
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 703 QIHDVFKMLSADVQVILLSATMPDDVLESISMLYERSC 816
+I DVF + +++ ++ +S + PD IS+L+ R C
Sbjct: 113 KISDVFVCVYSNLNILYISRSFPD----QISLLFSRYC 146
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 182 QGPFPEVHRNYLDPSMAHFWNPLANL 105
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,954,765
Number of Sequences: 5004
Number of extensions: 88749
Number of successful extensions: 329
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -