Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D06
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    49   1e-06
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.7  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    27   4.9  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   8.6  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
 Frame = +1

Query: 367 LRNVL*XGTRNPPFLVCVVPLNAQLDVGSALV-ILKTCSDGAVVNESENGIVHIG--LPN 537
           + N +  G    P ++ +VPL   +D  + L  +L++    A + + +   +     +  
Sbjct: 69  MNNRIFGGKNGAPKVITIVPLCNNVDSWNVLTNLLRSIDPEASLPKFDKDSISYSTTIDR 128

Query: 538 FKQRFSFICPEVGDDFALLDVLKIADTALYVSSALEEPVDEWGEKVLALSMAQGM 702
           FKQ   F+ P+  + ++L+D  K++D  ++V SA++E VDE+GE ++  +  QG+
Sbjct: 129 FKQNLLFLLPK-REFYSLIDACKVSDYVIFVLSAVQE-VDEFGELIVRTTQGQGI 181


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = -2

Query: 683 SAKTFSPHSSTGSSKAELT*RAVSAIFKTSRSAKSSPTSGQINENRCLKFGNPMCTIPFS 504
           +A + SP+ S  S     T     ++  +S S+  SPTS     +      N   T    
Sbjct: 503 TATSSSPYYSNSSIIVPTTVSTSGSV--SSFSSSPSPTSSFSGTSALSSSSNEETTTTTQ 560

Query: 503 DSFTTAPSEQVFRMT----SADPTSSCALSGTTQT 411
            ++TT+P E    MT    S+ P  + +   TT T
Sbjct: 561 VTYTTSPEETTTTMTTTTCSSRPEETISTVSTTST 595


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -1

Query: 627 IEGSVSYF*NIKKCKVVTYFRTNKRKPLFEIWQPDVYNSVFRLV 496
           I+G++ +   IK  KV+     ++  P+F+     +   +F +V
Sbjct: 291 IDGAIQHLAGIKDSKVIAAINRDENAPIFQTADVGIVGDLFEIV 334


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 538 FKQRFSFICPEVGDDFALLDVLK 606
           FKQ   +IC +V D+ +L+++LK
Sbjct: 114 FKQTGIWICKQVADESSLIEMLK 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,876
Number of Sequences: 5004
Number of extensions: 72959
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)