Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D06
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.96 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   5.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 280 FDVIVVSLEKTIAVIRLHKFAKIKGKR 360
           F+++ +S+++ IAV +  K+AK K  R
Sbjct: 275 FNLVAISIDRYIAVTQPIKYAKHKNNR 301


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 540 EIWQPDVYNSVFRLVYDSPIR-TGLQNDECRSYIELCIKRNDTN 412
           ++     Y S+ ++   +PI  T L N+  R Y ++C+ + DTN
Sbjct: 575 DVCDNQTYTSL-QMAMKNPIEFTDLSNE--RKYEDVCVLKTDTN 615


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 564 TNKRKPLFEIWQPDVYNSVFRLVYDSPIRTGL 469
           TN+R P F  +  +V++ + +   + P +T L
Sbjct: 274 TNRRNPWFSEYWEEVFDCLLKKERNGPTQTTL 305


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 564 TNKRKPLFEIWQPDVYNSVFRLVYDSPIRTGL 469
           TN+R P F  +  +V++ + +   + P +T L
Sbjct: 364 TNRRNPWFSEYWEEVFDCLLKKERNGPTQTTL 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,763
Number of Sequences: 438
Number of extensions: 4950
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)