Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_D03
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.                65   3e-10
BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28 p...    65   3e-10
BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28 p...    65   3e-10
BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28 p...    65   3e-10
U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28 pro...    64   6e-10
AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28 v...    45   4e-04

>CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.
          Length = 137

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 41/132 (31%), Positives = 55/132 (41%)
 Frame = -1

Query: 560 LXWMXIRXNXAFLVKKGXIKXPXSKXPXXVXNLXSXRXNGLIYXKXVGXXXNPDRKGFXV 381
           L WM +R   +FL+K+   K   S  P  +    S R NGLI+ K VG     D KG  V
Sbjct: 5   LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62

Query: 380 VYKKAKGTXKPXXKLIXRPFKGGXRXXLYKVKXLXKGXXXRTDLXKGTLXCGXXILRSXX 201
           V K+  G  KP    +        R  L  ++ + +    R DL    +     ILRS  
Sbjct: 63  VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

Query: 200 PXKAKKGXTXAT 165
           P   K+  T  T
Sbjct: 123 PVMVKRKRTRPT 134


>BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 41/132 (31%), Positives = 55/132 (41%)
 Frame = -1

Query: 560 LXWMXIRXNXAFLVKKGXIKXPXSKXPXXVXNLXSXRXNGLIYXKXVGXXXNPDRKGFXV 381
           L WM +R   +FL+K+   K   S  P  +    S R NGLI+ K VG     D KG  V
Sbjct: 5   LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62

Query: 380 VYKKAKGTXKPXXKLIXRPFKGGXRXXLYKVKXLXKGXXXRTDLXKGTLXCGXXILRSXX 201
           V K+  G  KP    +        R  L  ++ + +    R DL    +     ILRS  
Sbjct: 63  VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

Query: 200 PXKAKKGXTXAT 165
           P   K+  T  T
Sbjct: 123 PVMVKRKRTRPT 134


>BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 41/132 (31%), Positives = 55/132 (41%)
 Frame = -1

Query: 560 LXWMXIRXNXAFLVKKGXIKXPXSKXPXXVXNLXSXRXNGLIYXKXVGXXXNPDRKGFXV 381
           L WM +R   +FL+K+   K   S  P  +    S R NGLI+ K VG     D KG  V
Sbjct: 5   LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62

Query: 380 VYKKAKGTXKPXXKLIXRPFKGGXRXXLYKVKXLXKGXXXRTDLXKGTLXCGXXILRSXX 201
           V K+  G  KP    +        R  L  ++ + +    R DL    +     ILRS  
Sbjct: 63  VIKRRSGQRKPATSYVRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

Query: 200 PXKAKKGXTXAT 165
           P   K+  T  T
Sbjct: 123 PVMVKRKRTRPT 134


>BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 41/132 (31%), Positives = 55/132 (41%)
 Frame = -1

Query: 560 LXWMXIRXNXAFLVKKGXIKXPXSKXPXXVXNLXSXRXNGLIYXKXVGXXXNPDRKGFXV 381
           L WM +R   +FL+K+   K   S  P  +    S R NGLI+ K VG     D KG  V
Sbjct: 5   LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62

Query: 380 VYKKAKGTXKPXXKLIXRPFKGGXRXXLYKVKXLXKGXXXRTDLXKGTLXCGXXILRSXX 201
           V K+  G  KP    +        R  L  ++ + +    R DL    +     ILRS  
Sbjct: 63  VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

Query: 200 PXKAKKGXTXAT 165
           P   K+  T  T
Sbjct: 123 PVMVKRKRTRPT 134


>U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 64.1 bits (149), Expect = 6e-10
 Identities = 40/132 (30%), Positives = 55/132 (41%)
 Frame = -1

Query: 560 LXWMXIRXNXAFLVKKGXIKXPXSKXPXXVXNLXSXRXNGLIYXKXVGXXXNPDRKGFXV 381
           L WM +R   +FL+K+   K   S  P  +    S R NGLI+ K VG     D KG  V
Sbjct: 5   LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62

Query: 380 VYKKAKGTXKPXXKLIXRPFKGGXRXXLYKVKXLXKGXXXRTDLXKGTLXCGXXILRSXX 201
           V K+  G  KP    +        R  L  ++ + +    R DL    +     ILR+  
Sbjct: 63  VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQK 122

Query: 200 PXKAKKGXTXAT 165
           P   K+  T  T
Sbjct: 123 PVMVKRKRTRPT 134


>AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28
           variant protein.
          Length = 95

 Score = 44.8 bits (101), Expect = 4e-04
 Identities = 26/67 (38%), Positives = 33/67 (49%)
 Frame = -1

Query: 560 LXWMXIRXNXAFLVKKGXIKXPXSKXPXXVXNLXSXRXNGLIYXKXVGXXXNPDRKGFXV 381
           L WM +R   +FL+K+   K   S  P  +    S R NGLI+ K VG     D KG  V
Sbjct: 13  LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 70

Query: 380 VYKKAKG 360
           V K+  G
Sbjct: 71  VIKRRSG 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,772,001
Number of Sequences: 237096
Number of extensions: 793001
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)