Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_C24
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   259   3e-70
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   2.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    28   2.1  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   6.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   6.4  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   6.4  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    26   8.4  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  259 bits (635), Expect = 3e-70
 Identities = 125/207 (60%), Positives = 158/207 (76%), Gaps = 1/207 (0%)
 Frame = +3

Query: 195 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 374
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64

Query: 375 DYQKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQSPNIAEGVYLDREEIDIGAGDQGL 554
           DYQKV+R T+K IGYDDS KGFD++T N+LVAIE+QSP+IA+G++ ++   ++GAGDQG+
Sbjct: 65  DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124

Query: 555 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVH 734
           MFGYATDET E +PLT++LAHKLN  ++  RR+G   W RPD+KTQVT EY    GA + 
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184

Query: 735 RESYCSRVTATL*KDY-LETLRDEIRE 812
           R      V+A        E LR EI E
Sbjct: 185 RRVDTIVVSAQHADSISTEDLRSEILE 211


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +3

Query: 99  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 275
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L  
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692

Query: 276 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 374
                   K   E        L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 674 TRFKNTGYLRICICWWCNSPQRVI 745
           T   N GYLR C+ +  NSP+R I
Sbjct: 252 TYLHNNGYLRKCLTFVPNSPERCI 275


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 245  RPNKRRYSRRAPESGSGRKSCM 310
            +P KR+Y+R+AP   S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -2

Query: 688 VFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 569
           +F  G A++  N+PF +S +++  S   +T ++G+H  V ++
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 231 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 335
           P K  ++  D ++ + H N DPDAK+A   ++K  M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +3

Query: 303 VACETITKTGMVLLCGEITSK----ANVDYQKVVRETVKHIGYDDSSKGFDWRTLNLLVA 470
           V  E I    + + C +         NVD  + V  T+K I  D S++  + R       
Sbjct: 71  VLAEAIANAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPF 130

Query: 471 IEEQSPNIAEGVYLDREEIDIGAGDQGL 554
           IEE + ++     +DR +I +     GL
Sbjct: 131 IEELN-SLFPSDSIDRSKIRVLVPGSGL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,849,597
Number of Sequences: 5004
Number of extensions: 84032
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)