Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_C19
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0281 - 14570635-14574633                                         30   2.8  
12_01_0378 - 2946916-2947590                                           28   8.4  

>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +3

Query: 309 HGVRLSTLAPGLQGTSSGIVSQXEFRLIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAY 488
           H   L TL   + G +SG  S  E R +  +  ++L +        L N  + D    ++
Sbjct: 661 HLTSLQTLTYFVVGNNSGCSSIGELRHLKLQGQLQLCH--------LQNVTEADVSMSSH 712

Query: 489 GDGKDKTSPRVSWK 530
           G+GKD T     WK
Sbjct: 713 GEGKDLTQLSFGWK 726


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 70  GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 210
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,582
Number of Sequences: 37544
Number of extensions: 276419
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)