Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_C06
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.41
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 0.59
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.94
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.94
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.94
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 1.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.6
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 28 1.6
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 27 5.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 5.0
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 5.0
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 26 8.7
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 8.7
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 30.3 bits (65), Expect = 0.41
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 476 NFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFV 360
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect(2) = 0.59
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 904 PXVGPVR*XGXXPPPPPPG 848
P P+ G PPPPPPG
Sbjct: 752 PPPAPIM-GGPPPPPPPPG 769
Score = 22.6 bits (46), Expect(2) = 0.59
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 868 PPPPPPGXWXXXXGP 824
PPPPPP GP
Sbjct: 761 PPPPPPPPGVAGAGP 775
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.94
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 927 PXXXPPXPRXXGRFXXPXXXLPPPPPG 847
P PP P F P PPPPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 289 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 438
A+ L +++ T+ + P +T ET ++ S+ T T+ + TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 259 PTTDPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 438
P+T T T+ T+ +P TT+L T T T H+ T T+ + +
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTT 132
Query: 439 VL 444
V+
Sbjct: 133 VV 134
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 262 TTDPRGQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 435
TT P + T T ++ T T + +TTT+ + T + T T P + T+ LP++
Sbjct: 99 TTIPTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 336 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 440
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +3
Query: 120 IFSPSALLAMANAQVLISNPDPGFSRPVIGQPGYVPISTGPAYVXXXXXXXXXXXXGYEP 299
I +PSA + A I+ P P + P + Q G+ P++ + G++
Sbjct: 10 ISTPSASVVTAPLPATIALPSPNYYYPPVAQ-GHYPVNNMWSLPSNVRVISSHGAPGHQT 68
Query: 300 IDNRPYIVNPPKDYNPNGNGYEP 368
++P V P + N + Y P
Sbjct: 69 SASQPSTVMPALETNASNAQYYP 91
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 287 VSWPLGSVVGTVYVRWSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSR 132
++ P V+ T+Y R+ S H+ + G + + I RD+ L +G +SR
Sbjct: 30 INVPTTHVLQTLYTRFWSFKAHLGVDMELGIKGSLIHYRDDKLFLGEYPKSR 81
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 362 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 469
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 895 GPVR*XGXXPPPPPPGXWXXXXGPXF 818
GPVR G PPPP G P F
Sbjct: 119 GPVRGVGYTAPPPPAGFGRGAPPPGF 144
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = -1
Query: 263 VGTVYVRWSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSRRTENHEEFHFYMITSY 84
+GT Y + + L +YG + DENL +GH+ ++ +E + +Y
Sbjct: 272 LGTPYYSLGNEFERKQILDEYG-----LLANDENLVIGHTLRAEYCFMFDESDILQLRNY 326
Query: 83 HQAENS*RVL 54
E VL
Sbjct: 327 EHTEKELSVL 336
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 333 KDYNPNGNGYEPIDNGAYYVDRPQGRP 413
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,696
Number of Sequences: 5004
Number of extensions: 59018
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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