Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_C06
(932 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 36 0.061
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 1.7
06_03_1172 - 28147957-28148274,28149362-28149877 30 3.0
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 24 3.5
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 5.3
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 7.8
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310... 28 9.2
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 35.5 bits (78), Expect = 0.061
Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Frame = +3
Query: 171 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPK 335
SN D GF G PG P+ G P Y P P PP
Sbjct: 11 SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70
Query: 336 DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 440
Y P+ GY P GAY +P + P +PG
Sbjct: 71 GYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 291 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 449
Y P + P V PP Y P +G P N + Y + P GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>06_03_1172 - 28147957-28148274,28149362-28149877
Length = 277
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 930 APXXXPPXPRXXGRFXXPXXXLPPPPP 850
AP PP P F P +PPPPP
Sbjct: 10 APPPPPPSPPSVYPFLPPATFIPPPPP 36
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 24.2 bits (50), Expect(2) = 3.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 904 PXVGPVR*XGXXPPPPPP 851
P P G PPPPPP
Sbjct: 412 PPPPPTHTHGPPPPPPPP 429
Score = 23.8 bits (49), Expect(2) = 3.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 868 PPPPPPGXW 842
PPPPP G W
Sbjct: 429 PPPPPVGYW 437
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 930 APXXXPPXPRXXGRFXXPXXXLPPPPP 850
AP PP P G+ P PPPPP
Sbjct: 1930 APPPPPPPPPVEGKPKPPPHAPPPPPP 1956
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 927 PXXXPPXPRXXGRFXXPXXXLPPPPP 850
P PP P+ P LPPPPP
Sbjct: 230 PPPPPPPPKPANIAGAPGLPLPPPPP 255
Score = 24.6 bits (51), Expect(2) = 7.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 927 PXXXPPXPRXXGRFXXPXXXLPPPPP 850
P PP P R P L PPPP
Sbjct: 251 PPPPPPPPGPPPREIVPGQTLLPPPP 276
Score = 22.2 bits (45), Expect(2) = 7.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 867 LPPPPPG 847
LPPPPPG
Sbjct: 314 LPPPPPG 320
>03_01_0401 -
3108477-3108689,3108787-3108933,3109022-3109234,
3109321-3109938,3110045-3110584,3110941-3111041,
3111208-3111325,3111450-3111535,3111888-3112002
Length = 716
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 95 SYKNEILHDFQSVGSAGYGQRSSSHLEPGSWLFSARNR-STRIRANKYW 238
SYK + + GS GYG G W S NR R R N Y+
Sbjct: 355 SYKTGLSYSTNGYGSNGYGSNGYDSRLYGRWGLSMDNRYKPRGRGNGYY 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,180,826
Number of Sequences: 37544
Number of extensions: 523318
Number of successful extensions: 4490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3960
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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