Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_B19
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 35 0.017
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.090
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 31 0.16
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 31 0.16
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 1.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.1
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 2.6
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 2.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 7.8
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.7 bits (76), Expect = 0.017
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 260 IQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNVA- 436
I + N+ +D + +F G+ DI L +RD ++KY D + +A
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINL---VRDKETGKSKGFAFLKYEDQRSTVLAV 89
Query: 437 QHMTNTVFIDRALIVIPVQSGEIPDEHK 520
+MTN +DR + V V S ++P + K
Sbjct: 90 DNMTNVKLLDRLVRVDHVASYKVPQKEK 117
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.090
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +2
Query: 254 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKY-YDSANVN 430
R I V N+ TK+ + +FG G ID I P + + CY++Y Y N
Sbjct: 99 RTILVENLTRNVTKEHIAEIFGIYGLIDHI-FMPIYK--KSELNKGYCYIEYVYHDQAAN 155
Query: 431 VAQHMTNTVFIDRALIV 481
M N L V
Sbjct: 156 AVDKMNNAELDGEELFV 172
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 248 STRVIQVTNIAPQATKDQMQTLFGYLGKIDDI 343
S +VI VTNI+P+ T+ Q+ F + GK+ +I
Sbjct: 2 SNQVI-VTNISPEVTEKQISDFFSFCGKVSNI 32
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 31.5 bits (68), Expect = 0.16
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +2
Query: 236 MVSGSTRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYD 415
M + R + V N+A +A ++ + FG G ID +R+ +RD + Y+++ D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRI---VRDPKTNLGKGFAYIQFKD 320
Query: 416 SANVNVA 436
+ V+ A
Sbjct: 321 TMGVDKA 327
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 716 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVK 808
E RRTV V+ + LTS++L D F QAG V+
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVR 267
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 239 VSGSTRVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPT 358
+S + + V N++ AT+D + T FG G I IRL PT
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRL-PT 399
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +2
Query: 257 VIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNVA 436
++ + N++ + T ++M LFG G + IRL T++ + + Y D+
Sbjct: 13 ILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRG---TAFVVYENVQDAR--RAC 67
Query: 437 QHMTNTVFIDRALIV 481
+ ++ F+DR L+V
Sbjct: 68 EKLSGYNFMDRYLVV 82
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = +2
Query: 491 QSGEIPDEHKALEMSSNGTL---VPGLSSVEPRLPMHVINTLDGIPPNQVIQTHDANLTA 661
QSG++P++ ++ SNG L P S+ PR ++ + ++ +QT LT
Sbjct: 76 QSGQLPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQEQTMLLVRHRQLQTAQNYLTE 135
Query: 662 AGXXXXXXXXXXXDSRKIEEIRRTVLVADTGSLT 763
+ +++ R LV LT
Sbjct: 136 MKEALGRIKNELSTNERLDTSAREALVKQESELT 169
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 260 IQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVK 406
+ VTN P + + LF G + D+R +P++R R CYV+
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVR-FPSLR---YNTNRRFCYVQ 712
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,910
Number of Sequences: 5004
Number of extensions: 66110
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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