Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_B19
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0012 + 71903-72935,73468-73981,74619-76008                       37   0.023
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    31   0.88 
01_01_0768 - 5935319-5935417,5935536-5935583,5935721-5935780,593...    31   0.88 
06_03_0374 + 20026179-20026661,20027170-20027280,20027372-200274...    30   2.7  
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816...    30   2.7  
05_03_0259 - 11161447-11161706,11161764-11164266                       29   3.6  
03_06_0418 + 33785482-33785870,33786098-33786173,33786985-337870...    29   3.6  

>01_01_0012 + 71903-72935,73468-73981,74619-76008
          Length = 978

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 254 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 433
           +++Q++N++P  T D ++ LFGY GK+ D     TI D        I YV+Y        
Sbjct: 358 KMVQISNLSPLLTVDHIKQLFGYCGKVVDC----TITD-----SKHIAYVEYSKQEEATA 408

Query: 434 AQHMTN 451
           A  + N
Sbjct: 409 ALALNN 414


>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +2

Query: 500 EIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTLDGIPPNQV 631
           E P++ +A E  S GTLV G   VE ++    I TL  +PPNQV
Sbjct: 394 EYPEKGQAREFGSTGTLVSG---VEAKIVD--IKTLKHLPPNQV 432


>01_01_0768 -
           5935319-5935417,5935536-5935583,5935721-5935780,
           5935884-5935996,5936082-5936154,5936895-5936939,
           5937020-5937133,5937227-5937253,5937963-5938247
          Length = 287

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 716 EEIRRTVLVADTG-SLTSQQLIDHFCQAGEVKYMRFCSRDVDTLXYA 853
           + IRRTV V+D   ++T ++L D F   G+V   R C      L +A
Sbjct: 128 DSIRRTVYVSDIDHTVTEERLADIFANCGQVVDCRICGDPHSVLRFA 174


>06_03_0374 +
           20026179-20026661,20027170-20027280,20027372-20027416,
           20029610-20029682,20029762-20029874,20030009-20030068,
           20031518-20031565,20031658-20031726,20032928-20033092,
           20033630-20033680,20034774-20034803
          Length = 415

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 716 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSRDVDTLXYA 853
           + +RRTV V+D    +T Q+L + F   G+V   R C      L +A
Sbjct: 184 DSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFA 230


>02_02_0238 +
           8163922-8164362,8165008-8165118,8165205-8165249,
           8166066-8166138,8166215-8166327,8166430-8166489,
           8167287-8167334,8167422-8167490,8167618-8167679,
           8167771-8167828
          Length = 359

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 716 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSRDVDTLXYA 853
           + +RRTV V+D    +T Q+L + F   G+V   R C      L +A
Sbjct: 170 DSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFA 216


>05_03_0259 - 11161447-11161706,11161764-11164266
          Length = 920

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +2

Query: 443 MTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPG--LSSVEPRLPMHVINTL-DG 613
           M   VFI  AL+    + G++ + +  L+   N  ++PG  +S++E     HV++T+ DG
Sbjct: 635 MNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADG 694

Query: 614 IP 619
            P
Sbjct: 695 NP 696


>03_06_0418 +
           33785482-33785870,33786098-33786173,33786985-33787071,
           33788096-33788143
          Length = 199

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +2

Query: 254 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 433
           RV+ V N+    + ++M  +FG  G I  IRL    +D      + + Y   YD+   N 
Sbjct: 19  RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRL-GNAKDTR--GTAFVVYEDIYDAK--NA 73

Query: 434 AQHMTNTVFIDRALIVIPVQSGEI 505
             H++     +R LIV+  Q  ++
Sbjct: 74  VDHLSGFNVANRYLIVLYYQPAKM 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,075,168
Number of Sequences: 37544
Number of extensions: 414035
Number of successful extensions: 1132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)