Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_B17
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-3|CAC51073.1|  161|Caenorhabditis elegans Hypothetical ...    32   0.47 
M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein ( C.ele...    28   7.7  

>AL132948-3|CAC51073.1|  161|Caenorhabditis elegans Hypothetical
           protein Y39B6A.4 protein.
          Length = 161

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 883 PVPVAAARGDKSXLPGWTQDDSYRIRRSGRLNGGSCTQPSLERTTYTELRY 731
           P P      +KS +  W Q+  +  RR GR +GG   Q    RT YT++ Y
Sbjct: 71  PAPPQMTDEEKSIM--W-QNPEHPERRQGRYSGGDDEQTEFVRTEYTDMEY 118


>M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein (
           C.elegans DNA-bindingprotein (mab5) mRNA, 3' end. ).
          Length = 211

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 877 PVAAARGDKSXLPGWTQDDSY 815
           P+ + R   S  PGWT DDSY
Sbjct: 4   PLNSIRRQMSMYPGWTGDDSY 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,523
Number of Sequences: 27780
Number of extensions: 405014
Number of successful extensions: 1104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)