Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_B12
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.043
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.076
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.93 
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 559 PPPPXXXGXXFXPPPPPPP 615
           PPPP   G    PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 PPPPXXXGXXFXPPPPPPP 615
           PPPP        PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 PPPPXXXGXXFXPPPPPPP 615
           PPPP        PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 PPPPXXXGXXFXPPPPPPP 615
           PPPP   G     PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 704 PPXGGGXVXPPXGG--GXXPPPPPXPXXGXFXGG 609
           P  GG    PP  G  G  PPPPP P      GG
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
 Frame = +3

Query: 600 PPPPPXKXPXPGXWGGGGGXXPPXXG--XNXPPPXXGXPP 713
           P P P   P P    GG    PP  G     PPP    PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 544 PXKKXPPPPXXXGXXFXPPPPPPP 615
           P    PP P   G    PPPPPPP
Sbjct: 748 PIPVPPPAPIMGGP---PPPPPPP 768



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 544 PXKKXPPPPXXXGXXFXPPPPPPPXKXP 627
           P    PPPP          PPPPP   P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 675 PXGGGXXPPPPPXPXGXXFXGGGGGGGXKXXPPXP 571
           P  GG  PPPPP P G        G G    PP P
Sbjct: 756 PIMGG--PPPPPPPPGV------AGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 22/60 (36%), Positives = 22/60 (36%)
 Frame = -3

Query: 722 NFFXGXPPXGGGXVXPPXGGGXXPPPPPXPXXGXFXGGGGGGGXKXXPXXXGGGGXFFXG 543
           N F      GGG      GGG   PPP     G F G GG G         GGG   F G
Sbjct: 178 NLFHHRGHNGGGFGG--FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 559 PPPPXXXGXXFXPPPPPPP 615
           PPPP        PPPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +3

Query: 597  PPPPPPXKXPXPGXWGGGGGXXPPXXGXNXPPPXXGXPPKKIFXPXGXPXXA 752
            P PPP    P P    G     PP      P P  G PP  +      P  A
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
 Frame = +3

Query: 597  PPPPPPXKX--PXPGXWGGGGGXXPPXXGXNXPPPXXGXPPKKIFXPXGXPXXAXPKGG 767
            PP P P     P P    G     PP      P P  G PP  +  P   P    P  G
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP--VPPPSTAPPVPTPSAG 1225


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 653 PPPPPXPXXGXFXGGGGGGGXKXXPXXXGGGG 558
           PPPP  P  G   GGG  G         GG G
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRG 130


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 589 FXPPPPPPP 615
           F PPPPPPP
Sbjct: 944 FPPPPPPPP 952



 Score = 22.6 bits (46), Expect(2) = 5.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 588 FXXPPPPPP 614
           F  PPPPPP
Sbjct: 944 FPPPPPPPP 952



 Score = 21.8 bits (44), Expect(2) = 5.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 600 PPPPPXKXPXPGXWGG 647
           PPPPP   P     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 544  PXKKXPPPPXXXGXXFXPPPPPPP 615
            P    PPPP        PP  PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
 Frame = -3

Query: 665 GGXXPPPP-----PXPXXGXFXGGGGGGGXKXXPXXXGGGGXFF 549
           G   PPPP     P    G F G G GG         G GG  F
Sbjct: 72  GNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQF 115


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 666 GGXXPPPPPXPXGXXF 619
           GG  PPPPP P    F
Sbjct: 303 GGLPPPPPPPPPSNDF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.155    0.566 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,860
Number of Sequences: 5004
Number of extensions: 30886
Number of successful extensions: 281
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)