Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_B12
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 595  PPPPPPP 615
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 595  PPPPPPP 615
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 653  PPPPPXPXXG 624
            PPPPP P  G
Sbjct: 1356 PPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -1

Query: 709  GXPXXGGGXXXPXXGGXXPPPPP 641
            G    G     P  G   PPPPP
Sbjct: 1841 GRRSVGSARNIPVSGSPEPPPPP 1863


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 595 PPPPPPPXKXP 627
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/43 (27%), Positives = 13/43 (30%)
 Frame = -1

Query: 772 PPPPLGXAXXGXPXGXKIFXGGXPXXGGGXXXPXXGGXXPPPP 644
           PPP  G +    P              GG   P  G   PP P
Sbjct: 380 PPPNFGVSQVS-PVSMSALVSAVRSPAGGQLPPSAGAPMPPIP 421



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 870 RXSPPXXPPPXPPFXPPG 923
           R SPP      PP  PPG
Sbjct: 36  RGSPPNPSQGPPPGGPPG 53



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/30 (30%), Positives = 10/30 (33%)
 Frame = +3

Query: 303 KXPPXXXXPPXGGGXXPPKKKKXXXXGXPP 392
           + P     PP  G   PP        G PP
Sbjct: 402 RSPAGGQLPPSAGAPMPPIPNMSNMSGMPP 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.155    0.566 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,811
Number of Sequences: 438
Number of extensions: 8066
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)