Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_B06
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    29   1.2  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    28   1.6  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    27   2.8  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    26   6.4  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    26   8.5  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    26   8.5  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
 Frame = +1

Query: 385 NQQFTITELED-PNASTDSQKPECKPTKTRVRGGKACAGQTIFEEQFDSLDENVWQIEQY 561
           NQ +  T  +  P+ S + Q P+       V   +      I    + +   N+      
Sbjct: 266 NQYYASTSKQSIPSQSQNLQPPQKASVLGTVNNYRQYQNSFISLNDYQAAQSNISSPSSR 325

Query: 562 IPI-YHPEYPFVSYQRNNLTVSTADGNLHINAKLQQHMPGFLDDSIY 699
            P  Y P  PF +YQ    + S     L    +    MP +   S+Y
Sbjct: 326 FPTPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMPPYDRSSVY 372


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 896 APIDFRYSQSPCGNFALISTVPYVNANPIDVILPLTIGGRISAPEACLMHASADE 732
           A IDF   +  C N AL S V +V +  I+ ILP +   +    E    +  +D+
Sbjct: 678 ASIDFSTMKVECSNEALRSRVVHVLSRAINTILPFSEASQNDVSEDDFENEESDD 732


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 523 DSLDENVWQIEQYIPIYHPEYPFVSYQRNNLTV 621
           D+ D   W + QY+      YP + ++ + +TV
Sbjct: 32  DNYDSFTWNVVQYLSNLEKRYPIMVFRNDEITV 64


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 84  VSDFIYKNIVRSNARCENTSFSPERTSNIRSRCPQ 188
           +SD    +I ++NA C N  F  E+ S+   RC Q
Sbjct: 281 ISDSTPSDIAQANASCSNAEFK-EKVSSAIIRCLQ 314


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 84  VSDFIYKNIVRSNARCENTSFSPERTSNIRSRCPQNDTVRVPRQLEP 224
           +   + +N+V     C+   F    +S +RS  P N  V+V    +P
Sbjct: 315 IQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDP 361


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 691 SIYSGTLNLFSGCTSSAEACIK---QASGADILPPIVSGRITSIGFAFTYGTVEIRAKLP 861
           S    TL  F GC++ +E  +         + L P+ S  +   G    YG   I A + 
Sbjct: 136 SCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIK 195

Query: 862 QGDWLYRKSIGAV 900
           +GD +    +G+V
Sbjct: 196 EGDSVAVFGLGSV 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,738,496
Number of Sequences: 5004
Number of extensions: 81496
Number of successful extensions: 262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)