Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_B03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    28   1.5  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    26   8.2  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   8.2  

>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 880 LSVDFLMLVRGRSLWKTPATRPFYGSWPFA-GLLLTCSFLRYPLILW 743
           +S DF  +   + ++K   +  + G W    GLL TCSF    + LW
Sbjct: 261 ISNDFSSIDASKRIFKEHESMCYGGDWRHTDGLLATCSFYDKRVCLW 307


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = -2

Query: 311 YSITSRTLLHSIYLGLCT*ILKNYFSGFRCFRGLQIFIKFVEAVYHRAKVFLNSLRGQGG 132
           Y +  R +++  YL +   + ++Y  GF  FR ++ ++  +  + H+ ++ +  + G G 
Sbjct: 60  YDLEQRMIIYKDYLCIEK-LEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIILVDGNGV 118

Query: 131 FNFFPQFLNCFLRTL 87
            +     L C L  L
Sbjct: 119 LHPVGFGLACHLGVL 133


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 161 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 274
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,547
Number of Sequences: 5004
Number of extensions: 58425
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)