Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_B01
(879 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein. 31 5.5
BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein. 31 5.5
AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing regula... 31 5.5
Z46389-1|CAA86523.1| 380|Homo sapiens vasodilator-stimulated ph... 30 9.6
X98534-1|CAA67147.2| 378|Homo sapiens vasodilator-stimulated ph... 30 9.6
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 30 9.6
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 30 9.6
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 30 9.6
S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein. 30 9.6
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 30 9.6
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 30 9.6
K03208-1|AAA60189.1| 251|Homo sapiens PRB2 protein. 30 9.6
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 30 9.6
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 30 9.6
BC038224-1|AAH38224.1| 380|Homo sapiens vasodilator-stimulated ... 30 9.6
BC026019-1|AAH26019.1| 380|Homo sapiens vasodilator-stimulated ... 30 9.6
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 30 9.6
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 30 9.6
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 30 9.6
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 30 9.6
>U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein.
Length = 711
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 863 GGPXGGSXGGXXPGXKXIPRGGGXP 789
GGP GG GG G P GGG P
Sbjct: 43 GGPCGGGPGGGSAGGPSQPPGGGGP 67
>BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein.
Length = 710
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 863 GGPXGGSXGGXXPGXKXIPRGGGXP 789
GGP GG GG G P GGG P
Sbjct: 43 GGPGGGGPGGGSAGGPSQPPGGGGP 67
>AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing
regulatory protein protein.
Length = 115
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 863 GGPXGGSXGGXXPGXKXIPRGGGXP 789
GGP GG GG G P GGG P
Sbjct: 43 GGPCGGGPGGGSAGGPSQPPGGGGP 67
>Z46389-1|CAA86523.1| 380|Homo sapiens vasodilator-stimulated
phosphoprotein (VASP) protein.
Length = 380
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 787 GGXPPPRGXXLXPGXXPPXE-PPXGPP 864
GG PPP G PG PP PP G P
Sbjct: 168 GGPPPPPGPPPPPGPPPPPGLPPSGVP 194
>X98534-1|CAA67147.2| 378|Homo sapiens vasodilator-stimulated
phosphoprotein protein.
Length = 378
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 787 GGXPPPRGXXLXPGXXPPXE-PPXGPP 864
GG PPP G PG PP PP G P
Sbjct: 166 GGPPPPPGPPPPPGPPPPPGLPPSGVP 192
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein.
Length = 382
Score = 30.3 bits (65), Expect = 9.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 796 PPPRGXXLXPGXXPPXEPPXGPPXXXNK 879
PPP+G G PP +P PP NK
Sbjct: 108 PPPQGGNKPQGPPPPGKPQGPPPQGDNK 135
Score = 30.3 bits (65), Expect = 9.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 796 PPPRGXXLXPGXXPPXEPPXGPPXXXNK 879
PPP+G G PP +P PP NK
Sbjct: 170 PPPQGGNKPQGPPPPGKPQGPPPQGDNK 197
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 175 GAPPPGMMGPPPGMRPPMGPPMGIPP 200
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 175 GAPPPGMMGPPPGMRPPMGPPMGIPP 200
>K03208-1|AAA60189.1| 251|Homo sapiens PRB2 protein.
Length = 251
Score = 30.3 bits (65), Expect = 9.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 796 PPPRGXXLXPGXXPPXEPPXGPPXXXNK 879
PPP+G G PP +P PP NK
Sbjct: 39 PPPQGGNKPQGPPPPGKPQGPPPQGDNK 66
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>BC038224-1|AAH38224.1| 380|Homo sapiens vasodilator-stimulated
phosphoprotein protein.
Length = 380
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 787 GGXPPPRGXXLXPGXXPPXE-PPXGPP 864
GG PPP G PG PP PP G P
Sbjct: 168 GGPPPPPGPPPPPGPPPPPGLPPSGVP 194
>BC026019-1|AAH26019.1| 380|Homo sapiens vasodilator-stimulated
phosphoprotein protein.
Length = 380
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 787 GGXPPPRGXXLXPGXXPPXE-PPXGPP 864
GG PPP G PG PP PP G P
Sbjct: 169 GGPPPPPGPPPPPGPPPPPGLPPSGVP 195
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 30.3 bits (65), Expect = 9.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 792 GAPPXGYXFXPRGX-PPXGTPXGAPP 866
GAPP G P G PP G P G PP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP 207
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.315 0.151 0.516
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,220,552
Number of Sequences: 237096
Number of extensions: 1102306
Number of successful extensions: 3997
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3544
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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