Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_A24
         (1109 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical ...    30   2.6  
AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    29   4.5  

>AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical
           protein T06D10.2 protein.
          Length = 479

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/76 (25%), Positives = 30/76 (39%)
 Frame = +3

Query: 531 EXKXXXRXRXXXKXXXKKXXXXXEKRXEXGXXXKKXXEXKXKXKKKKEXGKXEXXEXXKX 710
           E +   R R   +   +K     EKR +     K+  + K +  KKKE  + E  E  K 
Sbjct: 104 EKQRIERERILEEKRLEKDKLAEEKRLDKEKKEKERLDKKLEEDKKKEEKRKEAEEKKKK 163

Query: 711 QXXXKXXKXXXKXKKR 758
               K  K   + K++
Sbjct: 164 DEEEKMKKDEERNKRK 179


>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
           protein F49H12.5 protein.
          Length = 257

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 20/69 (28%), Positives = 27/69 (39%)
 Frame = +3

Query: 600 EKRXEXGXXXKKXXEXKXKXKKKKEXGKXEXXEXXKXQXXXKXXKXXXKXKKRXXXXGGK 779
           EK+ E     KK  +   K ++KK+  K E  E  K +   K      K KK+      K
Sbjct: 170 EKKEEKKEEAKKEEKKVEKKEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKKDKK 229

Query: 780 XGXXKKXXK 806
               KK  K
Sbjct: 230 DKKDKKDKK 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.294    0.122    0.309 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,206,901
Number of Sequences: 27780
Number of extensions: 19022
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 3002662306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.7 bits)