Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_A12
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.6  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    27   3.6  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   4.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.3  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   6.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.3  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.3  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 553 LGGRTDSRTHKDSCQRRQN*PRHGRC 630
           L G+T  + H +SC  R++  RHG C
Sbjct: 49  LDGKTLEKQHCESCSIREDSSRHGIC 74


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 4/123 (3%)
 Frame = +3

Query: 396 NSTRNS*LSPIKYTFPTSISWPTRSPEQRICSEAKWTTLTSA----LRRMPLISSTVGRT 563
           NST ++ +S    ++ TS   PT S      S A  TT TSA    L  +   ++T   +
Sbjct: 395 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASS 454

Query: 564 NRLKDT*RLLSAKTKLTPPRPLQCLTSFSSRGHWHVPFNASETEEKDSTSMKKRSSRNRQ 743
             L       +     TP   +   T+ S+        N++      ST +   +S    
Sbjct: 455 TPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTST 514

Query: 744 CVS 752
            VS
Sbjct: 515 SVS 517


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 813 YGNSIIFAPNSSFSV*NNDCKRRIVGFLMIVFSSTWNLFLLFHL 682
           Y N+++    SS    N +  R  VGF+ +  +S     +LFHL
Sbjct: 831 YVNAVLEEVQSSLQSNNQEIARAAVGFIKMYITSFTKSKVLFHL 874


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 462 TRSPEQRICSEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 617
           +++ E+   +  K+T   + L R   +   +GR + ++ T R+LS +TK  P
Sbjct: 154 SKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = -2

Query: 416  SRISGRILRNADLIIRMCVLTLEPPLPQGFPLSLPWTVHRXQTRTRKAAASRREETLSHS 237
            S +   +L + D I+   +  +E  +      ++  T H       +   S+REE L  S
Sbjct: 1169 SELLNNLLNDFDKILNFILYNIESKIQTHASFNVTITEHNHVESKARTGFSKREEKLVRS 1228

Query: 236  C 234
            C
Sbjct: 1229 C 1229


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 621 RPLQCLTSFSSRGHWHVPFNASE--TEEKDSTSMKKRSSRNRQ 743
           RPLQC+   S+ G   +P N  E     + + + KK  SR RQ
Sbjct: 50  RPLQCVFICSTTGQGEMPLNMRERIITYRFNWASKKLDSRLRQ 92


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 494 SEVDNINFSAPKNAADIINRWADEQTQG-HIKTPVSEDKIDPATAVAMFN 640
           + + NINF AP+   +I++   +EQ     +K   SE   +P   VA+ N
Sbjct: 578 TSISNINFEAPRYKTNIVHSLNNEQKYVLEVKNGTSEK--NPTRIVALEN 625


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 416 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 559
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A KN +     WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,698
Number of Sequences: 5004
Number of extensions: 75872
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)