Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_A05
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    33   0.042
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    29   0.90 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   3.6  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   4.8  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   8.4  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
 Frame = +2

Query: 521 TLRFNEEYPYNSSIEGEQVFQALYAAGAKRNIKLKIAQNWPTKSMPNIDT---EYLVKKK 691
           TL+    YP   S+ G  +  A   +GAK  I  K+   +  +++PN+++   E LVK+ 
Sbjct: 303 TLQHRWRYP-TLSLHG--IEGAFSGSGAKTVIPAKVIGKFSIRTVPNMESETVERLVKEH 359

Query: 692 AAQV-RSLNFSKLLGSGVLHTKFWIV---DRTHFYIG 790
             +V  SLN    L    +H+  W +   D  H+ +G
Sbjct: 360 VTKVFNSLNSKNKLAFNNMHSGSWWISSPDHWHYDVG 396


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 425  YPPNSTHLPTKNVWLDLIDEAQSKIEIASFYWTLRFNEE-YPYNSSI 562
            Y P++ + P      +++D    +I+   FYW L F EE YP N+SI
Sbjct: 1250 YEPSAGYSPVS----EILDGRNDRIK--HFYWALWFGEEPYPENASI 1290


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 590 YAAGAKRNIKLKIAQNWPTKSMPNIDTEYLVKKKAAQVR 706
           Y+  A +NI+LK+ +    + + N++ E   KKK A ++
Sbjct: 94  YSKYASKNIELKLQKKEKEEELRNLEEEKAKKKKDANLK 132


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +2

Query: 419 HMYPPNSTHLPTKNVWLDLIDEAQSKIEIASFYWTLRFNEEYPYNSSIEGEQVFQALY 592
           ++Y   S     +  W D+  + Q++    + YW  R+     YN  +  E + ++LY
Sbjct: 436 YLYSEISDFESVEKCWSDMFHDFQNQ----ALYWISRYISTMKYNPELAAETLKKSLY 489


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 611 NIKLKIAQNWPTKSMPNIDTEYLVKKKAAQVRSLNFSKLLGSGVLH 748
           +I+ K  + W   +   +DTEYL     +++ S +FS  LG    H
Sbjct: 133 SIRPKSVKYWSDFNRLFLDTEYLFPVNCSELNSSDFSFQLGVERFH 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,303
Number of Sequences: 5004
Number of extensions: 71308
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)