Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_A01
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.18 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.95 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 18/69 (26%), Positives = 21/69 (30%)
 Frame = +1

Query: 730 PPPXTXXGXKXXXRXPPPXXGXXXXXFXPXPPPXXXXKPXXXPXPQXGDXXXPXPXPPXX 909
           PPP      +   + PP   G       P PPP         P P  G    P P P   
Sbjct: 311 PPPPPPPSRRNRGK-PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369

Query: 910 XXXXKXPLP 936
               + P P
Sbjct: 370 PSTGRQPPP 378



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
 Frame = +1

Query: 730 PPPXTXXGXKXXXRXPPPXXGXXXXXFXPXPPPXXXXK--PXXXPXPQXG-DXXXPXPXP 900
           PPP          R PPP          P PPP    +  P   P          P P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420

Query: 901 PXXXXXXKXPLPP 939
           P         LPP
Sbjct: 421 PSLPPSAPPSLPP 433



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
 Frame = +2

Query: 770 GGPPXXXGXXXXFXXXPPPPPX-XXNXXXXLXPKXXTXKXPXPPXPXXXXXXKXPSL 937
           G PP   G        PPPPP         L P+  +   P PP        + P L
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPL 379


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 28/134 (20%), Positives = 35/134 (26%), Gaps = 5/134 (3%)
 Frame = +1

Query: 553 PPXXXNSP--QXPPXKXXFSPGXNXXNPPLX---GXXXFPXPQXXXXXPXFSXXXWGGXX 717
           PP   + P    PP      PG +   PP+    G    P P                  
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268

Query: 718 XFFLPPPXTXXGXKXXXRXPPPXXGXXXXXFXPXPPPXXXXKPXXXPXPQXGDXXXPXPX 897
              +PPP      +     PPP          P PP          P P   +     P 
Sbjct: 269 GEHMPPPPMHH--EPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326

Query: 898 PPXXXXXXKXPLPP 939
           PP      +   PP
Sbjct: 327 PPMHHEPGEHMPPP 340



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 26/122 (21%), Positives = 32/122 (26%), Gaps = 5/122 (4%)
 Frame = +1

Query: 553 PPXXXNSP--QXPPXKXXFSPGXNXXNPPLX---GXXXFPXPQXXXXXPXFSXXXWGGXX 717
           PP   + P    PP      PG +   PP+    G    P P                  
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 281

Query: 718 XFFLPPPXTXXGXKXXXRXPPPXXGXXXXXFXPXPPPXXXXKPXXXPXPQXGDXXXPXPX 897
              +PPP      +     PPP          P PP          P P   +     P 
Sbjct: 282 GEHMPPPPMHH--EPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339

Query: 898 PP 903
           PP
Sbjct: 340 PP 341



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 25/122 (20%), Positives = 31/122 (25%), Gaps = 3/122 (2%)
 Frame = +1

Query: 583 PPXKXXFSPGXNXXNPPLX---GXXXFPXPQXXXXXPXFSXXXWGGXXXFFLPPPXTXXG 753
           PP      PG +   PP+    G    P P                     +PPP     
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH- 266

Query: 754 XKXXXRXPPPXXGXXXXXFXPXPPPXXXXKPXXXPXPQXGDXXXPXPXPPXXXXXXKXPL 933
            +     PPP          P PP          P P   +     P PP      +   
Sbjct: 267 -EPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 325

Query: 934 PP 939
           PP
Sbjct: 326 PP 327



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/71 (23%), Positives = 20/71 (28%)
 Frame = +1

Query: 727 LPPPXTXXGXKXXXRXPPPXXGXXXXXFXPXPPPXXXXKPXXXPXPQXGDXXXPXPXPPX 906
           +PPP      K     PPP          P PP          P P   +     P PP 
Sbjct: 207 MPPPPMHH--KPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM 264

Query: 907 XXXXXKXPLPP 939
                +   PP
Sbjct: 265 HHEPGEHMPPP 275


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
 Frame = -3

Query: 898 GXGGGFXXXXFGGEGXXXVXXXWXGGG-XXXKXXP-----XPPPXGGAXGGXFXPPGXXX 737
           G GG      FGGEG         GGG    +  P      P   GG  GG    PG   
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262

Query: 736 GG 731
           GG
Sbjct: 263 GG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,528
Number of Sequences: 5004
Number of extensions: 26663
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)