Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_P24
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    42   6e-06
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +1

Query: 109 GCGPKIGELYQKWNKPIAGVALGVACVEVVGALFALCLANSIRNMDRR 252
           GC   + +  +        VA+ +A VE++G + ALCLANSI+N +RR
Sbjct: 181 GCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAERR 228


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +1

Query: 142 KWNKPIAGVALGVACVEVVGALFALCL 222
           +WN   A     ++C+ +V  +   CL
Sbjct: 510 RWNSAFAIAPAVISCLGIVATMAVACL 536


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +1

Query: 142 KWNKPIAGVALGVACVEVVGALFALCL 222
           +WN   A     ++C+ +V  +   CL
Sbjct: 600 RWNSAFAIAPAVISCLGIVATMAVACL 626


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,340
Number of Sequences: 438
Number of extensions: 2581
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)