Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_P22
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    28   2.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   4.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   4.7  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   6.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   8.1  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
 Frame = +1

Query: 334 PVSSWSNVGRTGDVLPTPLS-NVETRPSP-------YSQHASHPSDHSLIYHDADVGAMV 489
           PV +W N         +P+S N E   SP        ++  ++ SD  +   D+DV    
Sbjct: 124 PVITWPNTDSPSATTSSPISRNPEYSVSPPNGSKFVKNEDEAYDSDLYVEEEDSDVKGRS 183

Query: 490 TVGTMGSHTDYDLRRR 537
            VG  G +   DL+RR
Sbjct: 184 MVGRDGRYKSEDLKRR 199


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 70  RTTYWKYSRCIFLELTLEHFTTKAMLXFHPKLGSERGSEWLCCFCLHVRTGTIILG 237
           + TYW Y+     EL + + T +A L F  K   E+  E  C     VR  T+++G
Sbjct: 356 KNTYWLYTTDSLHELVVNNETREASLVFLEKGDFEKALE--CANTAKVR-NTVLVG 408


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 745 GRDNKGYCISVVWRCYKYLTMRTAALQSLTPFVIS 849
           GRDNKG  ++ +W  + Y   R + + +  P ++S
Sbjct: 315 GRDNKGLILNELW-AFNYSQQRWSLVSNPIPILLS 348


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 325 HGPVHPAIEDHAQSLLKLLV 266
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 283 AIVRDPRLLDELDRESSPVSSWSNVG 360
           A V D    DELD+ SSP SS S+ G
Sbjct: 679 ATVEDDSPFDELDKFSSPFSSSSSRG 704


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 509 LTLIMIYGAARGKPAYLLPFFCLQIFDFAITILTATGYL 625
           L+L+ IY AA   P Y+      ++F+F++ ++ ++  L
Sbjct: 501 LSLMSIYVAAEENPLYVASSIFSKLFNFSLDLIKSSSKL 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,992
Number of Sequences: 5004
Number of extensions: 73186
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)