Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_P16
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0204 - 19022329-19023990                                         30   2.8  
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513...    29   3.6  
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    29   3.6  
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    28   8.4  
04_01_0249 - 3284107-3286377                                           28   8.4  

>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 281 IEKSCDKYMNVDVVKQFMEMYKMGMLPRGETF 376
           + K CD++  + VVK F +M K G+ P   TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


>06_03_0613 +
           22748223-22749513,22750046-22750179,22751066-22751309,
           22751401-22751609,22751691-22751740,22751933-22752053,
           22752138-22752383
          Length = 764

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -2

Query: 426 TRKTLTASSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAIS 259
           +R TL +  +W  L   K+    ++ +L ++ NCL  +   + S+++S L SL +S
Sbjct: 118 SRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHFSRMYS-LQSLVLS 172


>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 637 HLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARG 521
           H HH G   D A   EV  D V +      A G+V+ RG
Sbjct: 24  HHHHDGAAGDSAAAAEVPQDKVVAAAAAAAAAGNVQRRG 62


>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 769 SWRTSTLTLHVLPPHELSVLDDRRRIRHNKER 864
           S ++STL   V+ PHE S LD+ R    + ER
Sbjct: 211 SLQSSTLVAGVINPHENSHLDENRSAAFSSER 242


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +2

Query: 107 PRRQPQRLVVATGRWSSPRXPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 286
           PR      ++ +G+W   R  +V+      +L + ++LD+  +PT +    +   +YN+ 
Sbjct: 343 PRSWLHHALLCSGKWRLIRRLIVS------DLNLFRILDNNKKPTRYRMWSQTIGQYNLL 396

Query: 287 KSCDKYMNVDVVKQFMEMYKMGMLPR 364
             C +Y +    K     +K GM  R
Sbjct: 397 HECTRYESEARTKN----WKSGMFKR 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,357,968
Number of Sequences: 37544
Number of extensions: 432602
Number of successful extensions: 1127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)