Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_P13
(1142 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 1.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 1.2
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 1.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 1.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 1.2
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 29 8.1
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 29 8.1
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 29 8.1
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 29 8.1
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 29 8.1
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 29 8.1
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.5 bits (68), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 1028 GXXXGXWGGXXRQXXXGWXGPXEAG 954
G G WGG +Q GW GP + G
Sbjct: 288 GGGQGGWGGPQQQQQGGWGGPQQGG 312
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.5 bits (68), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 1028 GXXXGXWGGXXRQXXXGWXGPXEAG 954
G G WGG +Q GW GP + G
Sbjct: 251 GGGQGGWGGPQQQQQGGWGGPQQGG 275
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.5 bits (68), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 1028 GXXXGXWGGXXRQXXXGWXGPXEAG 954
G G WGG +Q GW GP + G
Sbjct: 250 GGGQGGWGGPQQQQQGGWGGPQQGG 274
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.5 bits (68), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 1028 GXXXGXWGGXXRQXXXGWXGPXEAG 954
G G WGG +Q GW GP + G
Sbjct: 289 GGGQGGWGGPQQQQQGGWGGPQQGG 313
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.5 bits (68), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 1028 GXXXGXWGGXXRQXXXGWXGPXEAG 954
G G WGG +Q GW GP + G
Sbjct: 288 GGGQGGWGGPQQQQQGGWGGPQQGG 312
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 922 PLXTRPLXSXRPASXGPXQPXXXWRXXPPHXPXXXPXPR 1038
P T PL R AS GP P R PP P PR
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPPPPRPVIPPR 1115
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 922 PLXTRPLXSXRPASXGPXQPXXXWRXXPPHXPXXXPXPR 1038
P T PL R AS GP P R PP P PR
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPPPPRPVIPPR 1109
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 922 PLXTRPLXSXRPASXGPXQPXXXWRXXPPHXPXXXPXPR 1038
P T PL R AS GP P R PP P PR
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPPPPRPVIPPR 1115
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 922 PLXTRPLXSXRPASXGPXQPXXXWRXXPPHXPXXXPXPR 1038
P T PL R AS GP P R PP P PR
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPPPPRPVIPPR 1109
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 922 PLXTRPLXSXRPASXGPXQPXXXWRXXPPHXPXXXPXPR 1038
P T PL R AS GP P R PP P PR
Sbjct: 1071 PPSTIPLPPTRGASVGPGPPAVPVRKAPPPPPRPVIPPR 1109
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +1
Query: 922 PLXTRPLXSXRPASXGPXQPXXXWRXXPPHXPXXXPXPR 1038
P T PL R AS GP P R PP P PR
Sbjct: 1077 PPSTIPLPPTRGASVGPGPPAVPVRKAPPPPPRPVIPPR 1115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,660,063
Number of Sequences: 27780
Number of extensions: 111507
Number of successful extensions: 312
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -