Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_P12
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    83   5e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    81   3e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    79   1e-15
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.7  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   8.6  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 34/61 (55%), Positives = 52/61 (85%)
 Frame = +2

Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 337
           L  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68

Query: 338 G 340
           G
Sbjct: 69  G 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 34/61 (55%), Positives = 52/61 (85%)
 Frame = +2

Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 337
           L  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKLS++P  
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 338 G 340
           G
Sbjct: 69  G 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 32/61 (52%), Positives = 52/61 (85%)
 Frame = +2

Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 337
           L  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68

Query: 338 G 340
           G
Sbjct: 69  G 69


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 342 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 175
           PPP     SFS    I+ ++ +P SS  T  + SP    S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 174 PPS 166
           P S
Sbjct: 246 PTS 248


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 318 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAK*IRGHV 139
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+  I    
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKE 510

Query: 138 THFLSPN 118
               SPN
Sbjct: 511 KPARSPN 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,865
Number of Sequences: 5004
Number of extensions: 29290
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)