Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_P12
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 82 5e-16
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 68 9e-12
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 68 1e-11
07_01_1001 - 8460467-8460799 50 2e-06
07_03_0321 + 16757414-16757743 48 8e-06
01_06_0098 - 26416768-26416998 31 0.97
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 29 3.9
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 5.2
12_01_0140 - 1088400-1088843 29 6.8
01_01_0049 - 373980-374148,374407-374451,375003-375149,375647-37... 29 6.8
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/62 (58%), Positives = 52/62 (83%)
Frame = +2
Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 337
LAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P G
Sbjct: 9 LAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSG 68
Query: 338 GG 343
GG
Sbjct: 69 GG 70
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 68.1 bits (159), Expect = 9e-12
Identities = 29/62 (46%), Positives = 45/62 (72%)
Frame = +2
Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 337
+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GREK +S+P G
Sbjct: 9 MAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSG 68
Query: 338 GG 343
GG
Sbjct: 69 GG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/62 (48%), Positives = 44/62 (70%)
Frame = +2
Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 337
LA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GREK +S+P G
Sbjct: 202 LATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCG 261
Query: 338 GG 343
GG
Sbjct: 262 GG 263
>07_01_1001 - 8460467-8460799
Length = 110
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +2
Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 337
+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+ VG
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 48.4 bits (110), Expect = 8e-06
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +2
Query: 158 LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 322
+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.97
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 185 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 283
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 190 SWRGLATQHSQVNTRPRNAFFK 125
SW+GL ++SQ N RP FF+
Sbjct: 863 SWKGLIDRYSQANLRPEILFFE 884
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 176 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 301
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
>12_01_0140 - 1088400-1088843
Length = 147
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 176 KTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 301
KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 25 KTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>01_01_0049 -
373980-374148,374407-374451,375003-375149,375647-375768,
375938-376042,376123-376234,376314-376381,376617-376766,
377471-377533,377616-377741,377841-377963,378206-378387,
379398-379488
Length = 500
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 137 VTWPRIYLAVLGGKTTPAAADVEKILSSVGIEAD--GEKLKKVITELNGKDVEQLIAAGR 310
VTWPR+ L LG T A +V+ + A G + V++ N K VE I
Sbjct: 372 VTWPRLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVELFIDENH 431
Query: 311 EKL 319
+K+
Sbjct: 432 QKV 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,600,673
Number of Sequences: 37544
Number of extensions: 235117
Number of successful extensions: 599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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