Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_P07
         (978 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.25 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.33 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 738  PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXA 866
            P ++ PPP     +P GP   PP P       P   +PG   A
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP-ASSAPSVPNPGDRSA 1751



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 738  PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGP 857
            P    PP       P  P   PP P A      P S+P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
 Frame = +3

Query: 753  PPPXXVSXVPGGPXRXPP--XPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXL 926
            PPP  VS +   P   PP   P +     P  +SP    A     P      PP   P  
Sbjct: 970  PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSA 1029

Query: 927  XXAPXXXP 950
               P   P
Sbjct: 1030 DAPPIPVP 1037



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 568  KSEVAKPPHXXX*RYXGGFPPGKLPSMALSLFXEPLSGLPGIP 696
            K  VA PP         G PP   PS+A      P SG+P +P
Sbjct: 1144 KPSVAAPPVPAP----SGAPPVPKPSVAAPPVPAPSSGIPPVP 1182


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 17/52 (32%), Positives = 19/52 (36%)
 Frame = +3

Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
           PPP  +   P  P   P  P A +   PP   P P  A     P     PPP
Sbjct: 735 PPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPPPPGVAGAG--PPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 19/68 (27%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
 Frame = +3

Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXY-XG*PXXXXXPPPXX 914
           P + TPP    S  P  P   PP         PP     P       G P     PP   
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 915 XPXLXXAP 938
            P    AP
Sbjct: 475 APPPAPAP 482



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 18/68 (26%), Positives = 20/68 (29%)
 Frame = +3

Query: 747 TTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXL 926
           T P P   S  P  P   PP     +    P + P P  A     P     P     P  
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP-PLPAGMPAAPPLPPA 472

Query: 927 XXAPXXXP 950
             AP   P
Sbjct: 473 APAPPPAP 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,572
Number of Sequences: 5004
Number of extensions: 52233
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)