Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_P07
(978 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 37 0.025
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 37 0.025
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 37 0.025
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 37 0.025
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.077
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.077
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.077
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 35 0.077
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.10
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.10
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.54
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 30 2.2
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 30 2.2
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 2.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.0
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 28 8.8
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 28 8.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 8.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.8
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 36.7 bits (81), Expect = 0.025
Identities = 31/90 (34%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Frame = -3
Query: 850 GXDRGGVWXTQAXGXGGXRXGPPGTXXTXXG--GGVVRXGXHAXPRKGRKGGNRVXPVNX 677
G +RGG G GG R GP G G GG G GR GG +
Sbjct: 292 GGERGG--RGGRGGFGGGRGGPMGGRGGFGGDRGGYGGGGGRGGFDGGRGGGGGFRGGDR 349
Query: 676 KGVRXTGRAPSRGAXQGGNRPGIFXXXRGG 587
G R R RG +GG R G RGG
Sbjct: 350 GGFRGGDRGGFRGGDRGGFRGGDRGGDRGG 379
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P +PPP P P PP P A PPR+ P G P PPP
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRS-SPGPXXAXYXG*PXXXXXPPP 908
PPP P PP P A PPR+ SP P P PPP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P +PPP P P P P +PP S P A P PPP
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 756 PPXXVSXVPGGPXRX--PPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXP 920
PP S P P PP P PP SP P A P PPP P
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 25.0 bits (52), Expect(2) = 2.7
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSP 851
P + PPP P PP P Q P RS P
Sbjct: 308 PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
Score = 23.4 bits (48), Expect(2) = 2.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 576 GGETPPRXXXKIPGRFPPWXAPLDGALP 659
GG PP P PP +P G+LP
Sbjct: 286 GGSPPPPRAGSPPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P +PPP P P PP P A PPR+ P G P PPP
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRS-SPGPXXAXYXG*PXXXXXPPP 908
PPP P PP P A PPR+ SP P P PPP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P +PPP P P P P +PP S P A P PPP
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 756 PPXXVSXVPGGPXRX--PPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXP 920
PP S P P PP P PP SP P A P PPP P
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 25.0 bits (52), Expect(2) = 2.6
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSP 851
P + PPP P PP P Q P RS P
Sbjct: 329 PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
Score = 23.4 bits (48), Expect(2) = 2.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 576 GGETPPRXXXKIPGRFPPWXAPLDGALP 659
GG PP P PP +P G+LP
Sbjct: 307 GGSPPPPRAGSPPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P +PPP P P PP P A PPR+ P G P PPP
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRS-SPGPXXAXYXG*PXXXXXPPP 908
PPP P PP P A PPR+ SP P P PPP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P +PPP P P P P +PP S P A P PPP
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 756 PPXXVSXVPGGPXRX--PPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXP 920
PP S P P PP P PP SP P A P PPP P
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 25.0 bits (52), Expect(2) = 2.6
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSP 851
P + PPP P PP P Q P RS P
Sbjct: 314 PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
Score = 23.4 bits (48), Expect(2) = 2.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 576 GGETPPRXXXKIPGRFPPWXAPLDGALP 659
GG PP P PP +P G+LP
Sbjct: 292 GGSPPPPRAGSPPPPPPPRGSPPTGSLP 319
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.1 bits (77), Expect = 0.077
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXLXX 932
PPP + + GGP PP P C PP P P G P PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGC----PPPPPPPPPGGFKGGPP--PPPPPGMFAPMAPV 799
Query: 933 APXXXP 950
P P
Sbjct: 800 IPDYLP 805
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXLXX 932
PPP + + GGP PP P PP + P G P PPP P
Sbjct: 714 PPPPGLPPITGGPP-PPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGC 768
Query: 933 APXXXP 950
P P
Sbjct: 769 PPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.1 bits (77), Expect = 0.077
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXLXX 932
PPP + + GGP PP P C PP P P G P PP P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGC----PPPPPPPPPGGFKGGPP--PPPPPGMFAPMAPV 799
Query: 933 APXXXP 950
P P
Sbjct: 800 IPDYLP 805
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXLXX 932
PPP + + GGP PP P PP + P G P PPP P
Sbjct: 714 PPPPGLPPITGGPP-PPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGC 768
Query: 933 APXXXP 950
P P
Sbjct: 769 PPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.1 bits (77), Expect = 0.077
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXLXX 932
PPP + + GGP PP P C PP P P G P PP P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGC----PPPPPPPPPGGFKGGPP--PPPPPGMFAPMAPV 382
Query: 933 APXXXP 950
P P
Sbjct: 383 IPDYLP 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPXXXPXLXX 932
PPP + + GGP PP P PP + P G P PPP P
Sbjct: 297 PPPPGLPPITGGPP-PPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGC 351
Query: 933 APXXXP 950
P P
Sbjct: 352 PPPPPP 357
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 35.1 bits (77), Expect = 0.077
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = -3
Query: 844 DRGGVWXTQAXGXGGXRXGPPGTXXTXX-GGGVVRXGXHAXPRKGRKGGNRVXPVNXKGV 668
DR G + + G GG R G G GG R G R G +GG+ +GV
Sbjct: 72 DREGGFSPRGRG-GGFRGGDRGGFRGGDRGGSPWRGGDRGNFRGGDRGGSPWRG-GDRGV 129
Query: 667 RXTGRAPSRGAXQGGNRPGIFXXXRGGVSP 578
GR G +GGN+ RGG +P
Sbjct: 130 ANRGRGDFSGGSRGGNKFSPRGGGRGGFTP 159
Score = 32.7 bits (71), Expect = 0.41
Identities = 37/123 (30%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Frame = -3
Query: 853 PGXDRGGVWXTQAXGX-GGXRXGPPGTXXTXXGGGVVRXGXHAXPRKGRKGGNRVXPVNX 677
PG RGG + G GG R PG GG G R G +GG R
Sbjct: 42 PGGFRGGDRGRSSSGFRGGDRGRSPGGFRGDREGGFSPRGRGGGFRGGDRGGFRGGDRGG 101
Query: 676 KGVRXTGRAPSRGAXQGGN-----RPGIFXXXRGGVSPPLT*ASIFCDARQGGGAYGKTP 512
R R RG +GG+ G+ RG S + F + +GGG G TP
Sbjct: 102 SPWRGGDRGNFRGGDRGGSPWRGGDRGVANRGRGDFSGGSRGGNKF--SPRGGGRGGFTP 159
Query: 511 ATR 503
R
Sbjct: 160 RGR 162
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.7 bits (76), Expect = 0.10
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P TP P + PG R PP P + + PP PG G P PPP
Sbjct: 267 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP-PGMPGMPPPPPP 322
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.10
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
P TP P + PG R PP P + + PP PG G P PPP
Sbjct: 277 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP-PGMPGMPPPPPP 332
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPX-PXACVXQTPPRSSPGP 857
P +PPP P P R PP P + + PPR+ P P
Sbjct: 150 PPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSP 190
Score = 31.9 bits (69), Expect = 0.71
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +3
Query: 753 PPPXXVSXVP---GGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPP 908
PPP V P P R PP + PPR+ P P P PPP
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPP 195
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGP 857
PPP G PP P V +TPP SP P
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPP 157
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/78 (35%), Positives = 34/78 (43%)
Frame = -3
Query: 856 GPGXDRGGVWXTQAXGXGGXRXGPPGTXXTXXGGGVVRXGXHAXPRKGRKGGNRVXPVNX 677
G G DRGG ++ GG R G G GGG R G R GR GG+R
Sbjct: 18 GRGGDRGG---SRGGFGGGGRGGYGGGDRGSFGGGD-RGGF----RGGRGGGDRGGFRGG 69
Query: 676 KGVRXTGRAPSRGAXQGG 623
+G G RG+ +GG
Sbjct: 70 RGGGDRGGFGGRGSPRGG 87
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 30.3 bits (65), Expect = 2.2
Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Frame = -3
Query: 919 GXXXGGGXXXXXGYPX*XAXXGPGXDRGGVWXTQAXGXGGXRXGPPGTXXTXXGGGVVRX 740
G GGG G G +GG G GG + G G GG
Sbjct: 153 GGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGN-QGGEQGGW 211
Query: 739 GXHAXPRKGRKGGNRVXPVNXKGVRXTGRAPSR--GAXQGGNRPG 611
G + G +GG++ N G + GR + G GG R G
Sbjct: 212 GGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRGG 256
Score = 28.3 bits (60), Expect = 8.8
Identities = 27/111 (24%), Positives = 35/111 (31%)
Frame = -3
Query: 919 GXXXGGGXXXXXGYPX*XAXXGPGXDRGGVWXTQAXGXGGXRXGPPGTXXTXXGGGVVRX 740
G GG G + G GG + + G G G G G +
Sbjct: 94 GGQDGGSSAGGWGGSQGGSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQG 153
Query: 739 GXHAXPRKGRKGGNRVXPVNXKGVRXTGRAPSRGAXQGGNRPGIFXXXRGG 587
G + +G GG + G G G QGGN+ G RGG
Sbjct: 154 GQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGG--GGGRGG 202
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGP 857
PPP +S P P PP P + P +SP P
Sbjct: 77 PPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPP 111
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 753 PPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGP 857
PPP +S P P PP P + P +SP P
Sbjct: 299 PPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPP 333
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.9 bits (64), Expect = 2.9
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Frame = -3
Query: 856 GPGXDRGGVWXTQAXGXGGXRXGPPGTXXTXX-GGGVVRXGXHAXPRKGRKGGN--RVXP 686
G G D G + G GG GP GGG R G PR G GG R P
Sbjct: 511 GYGGDMG--YGAYGGGYGGGYGGPGAYGDFGAYGGGGFRGGMRGSPRGGMGGGGGFRGGP 568
Query: 685 VNXKGV-RXTGRAPSRGAXQGG 623
G+ GR G +GG
Sbjct: 569 PGRGGMANRRGRGKRPGDGRGG 590
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +3
Query: 771 SXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYX-G*PXXXXXPPPXXXPXLXXAPXXX 947
S P P PP P + PP P P + G P PPP P + P
Sbjct: 1335 SPSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPP 1394
Query: 948 P 950
P
Sbjct: 1395 P 1395
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.8
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Frame = -3
Query: 949 GXXXGAXXXXGXXXGGGXXXXXGYPX*XAXXGPGXDRGGVWXTQAXGXGGXRXGPP---- 782
G G G GG G P G G D GG W Q G G GP
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGG-PGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQG 279
Query: 781 GTXXTXXGGGVVRXGXHAXPRKGRKGG 701
G GGG G P++ ++GG
Sbjct: 280 GGGWGQQGGG--GQGGWGGPQQQQQGG 304
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.8
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Frame = -3
Query: 949 GXXXGAXXXXGXXXGGGXXXXXGYPX*XAXXGPGXDRGGVWXTQAXGXGGXRXGPP---- 782
G G G GG G P G G D GG W Q G G GP
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGG-PGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQG 241
Query: 781 GTXXTXXGGGVVRXGXHAXPRKGRKGG 701
G GGG G P++ ++GG
Sbjct: 242 GGGWGQQGGG--GQGGWGGPQQQQQGG 266
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.8
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Frame = -3
Query: 949 GXXXGAXXXXGXXXGGGXXXXXGYPX*XAXXGPGXDRGGVWXTQAXGXGGXRXGPP---- 782
G G G GG G P G G D GG W Q G G GP
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGG-PGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQG 279
Query: 781 GTXXTXXGGGVVRXGXHAXPRKGRKGG 701
G GGG G P++ ++GG
Sbjct: 280 GGGWGQQGGG--GQGGWGGPQQQQQGG 304
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPG--GPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*PXXXXXPPPX 911
P PPP +P GP PP P PP P P P PPP
Sbjct: 61 PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPP---PPPMMGGIPPPPPMFGAPPPP 117
Query: 912 XXP-XLXXAP 938
P L AP
Sbjct: 118 PPPSGLGVAP 127
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 28.3 bits (60), Expect = 8.8
Identities = 28/101 (27%), Positives = 31/101 (30%), Gaps = 1/101 (0%)
Frame = -3
Query: 907 GGGXXXXXGYPX*XAXXGPGXDRG-GVWXTQAXGXGGXRXGPPGTXXTXXGGGVVRXGXH 731
GGG G+ G G + G G G GG R G G G G G
Sbjct: 64 GGGFNGNGGFNGGGRGGGRGGNGGFGDNGGLRGGNGGGRGGNGGFDDNGGGRGGNGGGRG 123
Query: 730 AXPRKGRKGGNRVXPVNXKGVRXTGRAPSRGAXQGGNRPGI 608
G GG R +G G GG RP I
Sbjct: 124 GTGGFGDNGGGRGGNGGGRGGNGGGNNGGGRGGNGGGRPQI 164
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 759 PXXVSXVPGGPXRXPPXPXACVXQTPPRSSP 851
P V+ P P R P + TPP SSP
Sbjct: 613 PRSVACTPNDPERVSPPEDGEIVDTPPHSSP 643
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 8.8
Identities = 24/79 (30%), Positives = 24/79 (30%)
Frame = -3
Query: 937 GAXXXXGXXXGGGXXXXXGYPX*XAXXGPGXDRGGVWXTQAXGXGGXRXGPPGTXXTXXG 758
G G GGG GY G G GG G GG GP G G
Sbjct: 100 GGGGDFGGGMGGGGYGGGGY------GGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYG 153
Query: 757 GGVVRXGXHAXPRKGRKGG 701
GG G G GG
Sbjct: 154 GGGGGGGDFGGYGGGGMGG 172
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +3
Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPG 854
P PPP + G P PP P PP PG
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPG 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,950
Number of Sequences: 27780
Number of extensions: 359851
Number of successful extensions: 1231
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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