Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_P07
         (978 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   9.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 465 SHVLSLRYPLILWITVLPPLSELIPLAA 382
           S +LSL   L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 486 GLLLAFCSHVL-SLRYPLILWITVLPPLSELIPL 388
           G  ++ CS +L SL    +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 41  ISCGRGSPVXLRVNWTPD 94
           IS   GSP+ L +N TPD
Sbjct: 313 ISAAIGSPIVLGLNNTPD 330


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 465 SHVLSLRYPLILWITVLPPLSELIPL 388
           S ++SL    +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 465 SHVLSLRYPLILWITVLPPLSELIPL 388
           S ++SL    +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 14/49 (28%), Positives = 16/49 (32%)
 Frame = +3

Query: 738 PXLTTPPPXXVSXVPGGPXRXPPXPXACVXQTPPRSSPGPXXAXYXG*P 884
           P +T       S  PG        P A    +PP  S GP      G P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 738 PXLTTPPPXXVSXVPGGPXRXPP 806
           P   +PP       PGGP   PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 670 VRXTGRAPSRGAXQGGNR 617
           +  TGR   RG  +GG+R
Sbjct: 75  IEETGRGKGRGHGKGGSR 92


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 465 SHVLSLRYPLILWITVLPPLSELIPL 388
           S +LSL    +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,421
Number of Sequences: 438
Number of extensions: 5029
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)