Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_P06
(925 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B440B Cluster: PREDICTED: hypothetical protein;... 72 2e-11
UniRef50_P60896 Cluster: 26 proteasome complex subunit DSS1; n=2... 69 2e-10
UniRef50_UPI0000E0AE02 Cluster: PREDICTED: candidate for split h... 64 4e-09
UniRef50_Q95Y72 Cluster: Putative 26 proteasome complex subunit ... 50 1e-04
UniRef50_A2ZSE6 Cluster: Putative uncharacterized protein; n=2; ... 49 1e-04
UniRef50_Q9XIR8 Cluster: Probable 26 proteasome complex subunit ... 48 3e-04
UniRef50_A5DM43 Cluster: Putative uncharacterized protein; n=2; ... 48 4e-04
UniRef50_Q23BV9 Cluster: DSS1/SEM1 family protein; n=1; Tetrahym... 46 0.002
UniRef50_Q70ET7 Cluster: Deleted in split hand/splt foot protein... 45 0.002
UniRef50_Q7SA04 Cluster: Putative 26 proteasome complex subunit ... 45 0.002
UniRef50_Q0UM79 Cluster: Predicted protein; n=2; Pezizomycotina|... 43 0.010
UniRef50_Q54K21 Cluster: DSS1/SEM1 family protein; n=1; Dictyost... 43 0.013
UniRef50_O14140 Cluster: mRNA export factor dss1; n=1; Schizosac... 42 0.017
UniRef50_Q6UN72 Cluster: Brh2-interacting protein Dss1; n=1; Ust... 41 0.039
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.051
UniRef50_Q6FY58 Cluster: Similar to tr|O94742 Saccharomyces cere... 40 0.068
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 40 0.090
UniRef50_Q5K733 Cluster: Putative uncharacterized protein; n=1; ... 40 0.12
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.12
UniRef50_A4RYH8 Cluster: Predicted protein; n=1; Ostreococcus lu... 39 0.16
UniRef50_P62499 Cluster: Probable 26 proteasome complex subunit ... 39 0.21
UniRef50_Q0D1F9 Cluster: Predicted protein; n=2; Eurotiomycetida... 38 0.27
UniRef50_O94742 Cluster: 26 proteasome complex subunit SEM1; n=2... 38 0.36
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 37 0.84
UniRef50_UPI00006CA3B6 Cluster: hypothetical protein TTHERM_0052... 36 1.5
UniRef50_Q6CB21 Cluster: Yarrowia lipolytica chromosome C of str... 36 1.5
UniRef50_A5DUD0 Cluster: Predicted protein; n=3; Saccharomycetac... 36 1.5
UniRef50_Q5BDY5 Cluster: Putative uncharacterized protein; n=1; ... 35 3.4
UniRef50_A0DYA6 Cluster: Chromosome undetermined scaffold_7, who... 34 5.9
UniRef50_A7EBK5 Cluster: Predicted protein; n=1; Sclerotinia scl... 34 5.9
UniRef50_Q2HFP8 Cluster: Putative uncharacterized protein; n=7; ... 33 7.8
>UniRef50_UPI00015B440B Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 63
Score = 71.7 bits (168), Expect = 2e-11
Identities = 27/39 (69%), Positives = 34/39 (87%)
Frame = +3
Query: 213 NWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 329
NW +D D+ED+SVWEDNW+DD ++DDFNQQLR QL+KL
Sbjct: 14 NWTAKDEDNEDISVWEDNWDDDDVEDDFNQQLRSQLDKL 52
>UniRef50_P60896 Cluster: 26 proteasome complex subunit DSS1; n=22;
Coelomata|Rep: 26 proteasome complex subunit DSS1 - Homo
sapiens (Human)
Length = 70
Score = 68.9 bits (161), Expect = 2e-10
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +3
Query: 150 KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 326
KQ VDLG PAE+W D +DED VWEDNW+DD ++DDF+ QLR +LEK
Sbjct: 5 KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAELEK 62
>UniRef50_UPI0000E0AE02 Cluster: PREDICTED: candidate for split
hand/foot malformation type 1 isoform 1; n=4; Pan
troglodytes|Rep: PREDICTED: candidate for split
hand/foot malformation type 1 isoform 1 - Pan
troglodytes
Length = 65
Score = 64.5 bits (150), Expect = 4e-09
Identities = 29/62 (46%), Positives = 38/62 (61%)
Frame = +3
Query: 150 KQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 329
KQ VDLG PAE+W D +DED VWEDNW+DD ++DDF+ QLR +L
Sbjct: 5 KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAGYSEL 63
Query: 330 KD 335
++
Sbjct: 64 EE 65
>UniRef50_Q95Y72 Cluster: Putative 26 proteasome complex subunit
sem1; n=2; Caenorhabditis|Rep: Putative 26 proteasome
complex subunit sem1 - Caenorhabditis elegans
Length = 82
Score = 49.6 bits (113), Expect = 1e-04
Identities = 16/42 (38%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +3
Query: 204 PAENWGTE-DADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 326
P + W + +++DV+VWEDNW+D+ + +F++QL+++L K
Sbjct: 35 PVQEWAERAEGEEDDVNVWEDNWDDETHESEFSKQLKEELRK 76
>UniRef50_A2ZSE6 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 120
Score = 49.2 bits (112), Expect = 1e-04
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +3
Query: 207 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 329
++ W ++ +E V WED+W+DD + DDF+ QLR++LE +
Sbjct: 76 SDEWDDKEEGNEAVQQWEDDWDDDDVNDDFSLQLRKELESI 116
>UniRef50_Q9XIR8 Cluster: Probable 26 proteasome complex subunit
sem1-1; n=10; Magnoliophyta|Rep: Probable 26 proteasome
complex subunit sem1-1 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 74
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 210 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 341
E+W ++ E WED+W+DD + DDF++QLR++LE D+K
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74
>UniRef50_A5DM43 Cluster: Putative uncharacterized protein; n=2;
Ascomycota|Rep: Putative uncharacterized protein -
Pichia guilliermondii (Yeast) (Candida guilliermondii)
Length = 68
Score = 47.6 bits (108), Expect = 4e-04
Identities = 17/40 (42%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = +3
Query: 216 WGTEDADD-EDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 332
W TE ++ + S+WE++W+DD +QD F+QQLR++L++ +
Sbjct: 28 WSTEASNKAQGASLWEEDWDDDDVQDQFSQQLREELKRAR 67
>UniRef50_Q23BV9 Cluster: DSS1/SEM1 family protein; n=1; Tetrahymena
thermophila SB210|Rep: DSS1/SEM1 family protein -
Tetrahymena thermophila SB210
Length = 137
Score = 45.6 bits (103), Expect = 0.002
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +3
Query: 210 ENWGTEDADDE-DVSVWEDNWEDDVIQDDFNQQLRQQL 320
E+W D++ DV W ++W+D+ I DDFNQ+LR+QL
Sbjct: 97 EDWQDIQVDEKIDVKQWREDWDDEDINDDFNQELRKQL 134
>UniRef50_Q70ET7 Cluster: Deleted in split hand/splt foot protein 1;
n=2; Magnoliophyta|Rep: Deleted in split hand/splt foot
protein 1 - Solanum lycopersicum (Tomato) (Lycopersicon
esculentum)
Length = 51
Score = 45.2 bits (102), Expect = 0.002
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 210 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 341
+ W ++ E WED+W+DD + DDF+ QL+++LE ++K
Sbjct: 8 DEWESKKEGKEATQQWEDDWDDDDVNDDFSLQLKRELESNTEKK 51
>UniRef50_Q7SA04 Cluster: Putative 26 proteasome complex subunit
sem1; n=8; Pezizomycotina|Rep: Putative 26 proteasome
complex subunit sem1 - Neurospora crassa
Length = 91
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +3
Query: 204 PAENWGTEDAD-----DEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 341
P ++W ED + +E +WE++W+DD DDF+ QL+++L+K++ K
Sbjct: 39 PVDDWEAEDTEAAKGNNEAKHLWEESWDDDDTSDDFSAQLKEELKKVEAAK 89
>UniRef50_Q0UM79 Cluster: Predicted protein; n=2;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 88
Score = 43.2 bits (97), Expect = 0.010
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 204 PAENWGTEDAD--DEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 329
P E+W E+ + + +WE++W+DD +DF QLR++L+KL
Sbjct: 43 PVEDWTEEETQIPNGNAHLWEESWDDDDTNEDFAVQLREELKKL 86
>UniRef50_Q54K21 Cluster: DSS1/SEM1 family protein; n=1;
Dictyostelium discoideum AX4|Rep: DSS1/SEM1 family
protein - Dictyostelium discoideum AX4
Length = 76
Score = 42.7 bits (96), Expect = 0.013
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 228 DADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 344
+ +D WED+W+ D I DDF++QLR ++E KS
Sbjct: 38 EGEDNSKEQWEDDWDTDKIDDDFSKQLRAEIESHSTMKS 76
>UniRef50_O14140 Cluster: mRNA export factor dss1; n=1;
Schizosaccharomyces pombe|Rep: mRNA export factor dss1 -
Schizosaccharomyces pombe (Fission yeast)
Length = 71
Score = 42.3 bits (95), Expect = 0.017
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Frame = +3
Query: 210 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQLEK 326
ENW +D D D ++WE+NW+D D+ DDF+ QL+ +L+K
Sbjct: 24 ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65
>UniRef50_Q6UN72 Cluster: Brh2-interacting protein Dss1; n=1;
Ustilago maydis|Rep: Brh2-interacting protein Dss1 -
Ustilago maydis (Smut fungus)
Length = 119
Score = 41.1 bits (92), Expect = 0.039
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 219 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 326
G A D +W+D+W+DD ++DDF++ LR +L+K
Sbjct: 75 GASSASTGD-HLWQDSWDDDTVEDDFSKALRAELDK 109
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.051
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +2
Query: 674 SALMNRPTRGERRFAYW 724
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_Q6FY58 Cluster: Similar to tr|O94742 Saccharomyces
cerevisiae YDR363wa SEM1P; n=1; Candida glabrata|Rep:
Similar to tr|O94742 Saccharomyces cerevisiae YDR363wa
SEM1P - Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 90
Score = 40.3 bits (90), Expect = 0.068
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 219 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 326
GT + + +WE+NW+D DDF Q+LR +L+K
Sbjct: 55 GTSGTNGKRNIIWEENWDDVEADDDFTQELRAELQK 90
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 39.9 bits (89), Expect = 0.090
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +2
Query: 479 DPDMIRYIDXXGQTTTRMQ 535
DPDMIRYID GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q5K733 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 89
Score = 39.5 bits (88), Expect = 0.12
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3
Query: 249 SVWEDNWEDDVIQDDFNQQLR 311
++WEDNW+DD + DDF +QLR
Sbjct: 64 NLWEDNWDDDDVDDDFTKQLR 84
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.5 bits (88), Expect = 0.12
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -3
Query: 728 APNTQTASPRALADSLMQ 675
APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348
>UniRef50_A4RYH8 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 74
Score = 39.1 bits (87), Expect = 0.16
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 207 AENWGT--EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 326
A+ W +A D + WE++W+D ++DDF++QLR +L +
Sbjct: 29 AKKWDETQNNATTRDATQWEEDWDDGDVRDDFSKQLRAELTR 70
>UniRef50_P62499 Cluster: Probable 26 proteasome complex subunit
SEM1; n=2; Saccharomycetaceae|Rep: Probable 26
proteasome complex subunit SEM1 - Ashbya gossypii
(Yeast) (Eremothecium gossypii)
Length = 69
Score = 38.7 bits (86), Expect = 0.21
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = +3
Query: 204 PAENWGTEDA----DDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 332
P ++W + + + D +WE++W+D ++DDF ++L+++LE K
Sbjct: 23 PVDSWPSTETLKAYKEGDSCLWEEDWDDVEVEDDFTKELKKELESNK 69
>UniRef50_Q0D1F9 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 104
Score = 38.3 bits (85), Expect = 0.27
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Frame = +3
Query: 204 PAENWGTED----ADDEDVSVWEDNWEDDVIQDDFNQQLR 311
P E+W E+ A+ +V +WE++W+DD +DF++QL+
Sbjct: 33 PVEDWPQEETEQAANGTNVHLWEESWDDDDAAEDFSKQLK 72
>UniRef50_O94742 Cluster: 26 proteasome complex subunit SEM1; n=2;
Saccharomyces cerevisiae|Rep: 26 proteasome complex
subunit SEM1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 89
Score = 37.9 bits (84), Expect = 0.36
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +3
Query: 249 SVWEDNWEDDVIQDDFNQQLRQQLEKLK 332
++WE+NW+D + DDF +L+ +L++ K
Sbjct: 58 NIWEENWDDVEVDDDFTNELKAELDRYK 85
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 36.7 bits (81), Expect = 0.84
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +1
Query: 676 CINESANARGEAVCVLGALPFPRSLTRC 759
CI + A AR EAV VL ALP RS TRC
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRC 293
>UniRef50_UPI00006CA3B6 Cluster: hypothetical protein
TTHERM_00525140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00525140 - Tetrahymena
thermophila SB210
Length = 1083
Score = 35.9 bits (79), Expect = 1.5
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 213 NWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 341
N TED D ED+ ++D E D + +D ++ + QQL+ L QK
Sbjct: 208 NLSTEDDDGEDIDYFQDKDECDEMDEDSDRYINQQLDILGVQK 250
>UniRef50_Q6CB21 Cluster: Yarrowia lipolytica chromosome C of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome C of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 68
Score = 35.9 bits (79), Expect = 1.5
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +3
Query: 252 VWEDNWEDDVIQDDFNQQLRQQLEKLK 332
+WE++W+ D +DDF+ QL+++L K +
Sbjct: 42 LWEEDWDHDDAEDDFSAQLKEELSKTR 68
>UniRef50_A5DUD0 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Lodderomyces
elongisporus (Yeast) (Saccharomyces elongisporus)
Length = 97
Score = 35.9 bits (79), Expect = 1.5
Identities = 16/44 (36%), Positives = 31/44 (70%)
Frame = +3
Query: 213 NWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 344
+W E+ E ++WE++W+D+ QD F+Q+L+++L +K QK+
Sbjct: 53 DWVNENKVKES-TLWEEDWDDEDDQDAFSQKLKEEL--IKAQKA 93
>UniRef50_Q5BDY5 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 83
Score = 34.7 bits (76), Expect = 3.4
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Frame = +3
Query: 204 PAENWGTED-----ADDEDVSVWEDNWEDDVIQDDFNQQLR 311
P ++W + A+ +V +WE++W+DD +DF++QL+
Sbjct: 36 PVDDWPENETEQATANGNNVHLWEESWDDDDAAEDFSKQLK 76
>UniRef50_A0DYA6 Cluster: Chromosome undetermined scaffold_7, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_7,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 74
Score = 33.9 bits (74), Expect = 5.9
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 243 DVSVWEDNWEDDVIQDDFNQQLRQQL 320
D+ W ++W+D+ + D+F+ QL+Q+L
Sbjct: 46 DIKQWREDWDDEDLTDEFSIQLKQEL 71
>UniRef50_A7EBK5 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 167
Score = 33.9 bits (74), Expect = 5.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 210 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLE 323
+ W ED +DE+ WED+WE++V + + ++ + E
Sbjct: 80 DEW-EEDGEDEEAGEWEDDWEEEVEEYELYDEVMEDEE 116
>UniRef50_Q2HFP8 Cluster: Putative uncharacterized protein; n=7;
Pezizomycotina|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 713
Score = 33.5 bits (73), Expect = 7.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 147 DKQKVDLGXXXXXXXXXXXPAENWGTEDADDEDVSVWEDNWEDDVIQDD 293
D VDLG P E+W D +D+D ED+ EDD D+
Sbjct: 508 DMYAVDLGKLDGCKEVFNRPVEDWVVSDDEDDDEDEDEDDDEDDEDNDE 556
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,209,754
Number of Sequences: 1657284
Number of extensions: 10294560
Number of successful extensions: 30305
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 26659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29777
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -