Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_P01
         (1233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    33   0.42 
AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    29   5.1  

>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 1/117 (0%)
 Frame = +1

Query: 325 KKKXXXXXKXXEXKKKXKKKXQXXXXXKXXXXXXXXKKKXKXKKXXXK-KXXKXKXXXXK 501
           KKK     +  E  KK K K +     +        KKK K  K   + +  K K    K
Sbjct: 185 KKKDDNDEEEKEKDKKKKDKKKDDDDDEDENDKKKDKKKKKDDKDDDENEDDKKKDKKKK 244

Query: 502 XXXKKKXXXKQXXTKXXKXXKKKXXQTKKXXKKEGXKXKXXXXXXXXXTKQXXKXXK 672
              K+K    +      K  KKK    ++  KK+  K K          K+  K  K
Sbjct: 245 KDDKEKDDDDEEEKDKKKKDKKKNDDDEEDKKKDKKKKKDDDDDEDEDNKKKDKKKK 301



 Score = 30.7 bits (66), Expect = 2.2
 Identities = 32/121 (26%), Positives = 39/121 (32%), Gaps = 4/121 (3%)
 Frame = +2

Query: 269 KXKXXKKKXKXXEXKXXXXKKKXXXXXXXXKXKKXKKKXXKXXKXXKXXXXXXXXKKKXX 448
           K K  +K     E      KKK        + +K KKK  K  K           KKK  
Sbjct: 164 KKKKDEKNDDDDEEDKKKDKKKKKDDNDEEEKEKDKKKKDK--KKDDDDDEDENDKKKDK 221

Query: 449 XKNXXXKKXTXXKXXXQXXXXRKKXXXNKXXQKXXXKXKKXXXKXK----KXXKKKXKKX 616
            K    K     +   +    +KK    K       K KK   K K    +  KKK KK 
Sbjct: 222 KKKKDDKDDDENEDDKKKDKKKKKDDKEKDDDDEEEKDKKKKDKKKNDDDEEDKKKDKKK 281

Query: 617 K 619
           K
Sbjct: 282 K 282



 Score = 30.3 bits (65), Expect = 2.9
 Identities = 25/95 (26%), Positives = 34/95 (35%)
 Frame = +1

Query: 328 KKXXXXXKXXEXKKKXKKKXQXXXXXKXXXXXXXXKKKXKXKKXXXKKXXKXKXXXXKXX 507
           KK        E K+K KKK +              KKK K KK   K   + +    K  
Sbjct: 183 KKKKKDDNDEEEKEKDKKK-KDKKKDDDDDEDENDKKKDKKKKKDDKDDDENEDDKKKDK 241

Query: 508 XKKKXXXKQXXTKXXKXXKKKXXQTKKXXKKEGXK 612
            KKK   ++      +  KKK  + K    +E  K
Sbjct: 242 KKKKDDKEKDDDDEEEKDKKKKDKKKNDDDEEDKK 276



 Score = 29.5 bits (63), Expect = 5.1
 Identities = 24/93 (25%), Positives = 29/93 (31%)
 Frame = +1

Query: 325 KKKXXXXXKXXEXKKKXKKKXQXXXXXKXXXXXXXXKKKXKXKKXXXKKXXKXKXXXXKX 504
           KKK     +  + KKK KKK +     +        KKK K K        K K    K 
Sbjct: 281 KKKDDDDDEDEDNKKKDKKKKKDDKDDEDEEKEKDKKKKDKKKDDDDDDDEKEKKDKKKK 340

Query: 505 XXKKKXXXKQXXTKXXKXXKKKXXQTKKXXKKE 603
             K     +    K  K         K   KKE
Sbjct: 341 DDKDDDEDEDKDDKKKKKDDVDDDMKKDKKKKE 373


>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
           protein F49H12.5 protein.
          Length = 257

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 22/84 (26%), Positives = 29/84 (34%)
 Frame = +3

Query: 285 KKKXKXXKXXXXXKKKKXXXXXXXXXKKKXKKKXXKXXKXXXXXXXXXXXKKKXXKKTXA 464
           +KK +  +     +KK          KK  KK+  K  K           KKK  KK   
Sbjct: 170 EKKEEKKEEAKKEEKKVEKKEEKKDKKKDEKKEEKKEKKEDKKKDEKKKDKKKEDKKDKK 229

Query: 465 KKXXQXXKXXXKXXXKEKKXKXTK 536
            K  +  K   K    +KK K  K
Sbjct: 230 DKKDKKDKKDKKEKKDDKKSKKNK 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.295    0.115    0.295 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,657,228
Number of Sequences: 27780
Number of extensions: 27761
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.8 bits)