Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_O20
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   4.8  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    27   4.8  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    26   8.3  

>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -1

Query: 817 LHNYIKKTSXQY---IICKTYFVNNI-DIFLNQSKI 722
           LH+++   S  Y   +ICKTY V +I +IF+N + I
Sbjct: 216 LHSHVTPHSLAYTQSVICKTYKVESIEEIFVNFNPI 251


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 461 CLCQWRLVRSCWPSPDVHRS*CCHLRVLRPWCRKP 357
           CLC+   +++    P +    CCH    R WC  P
Sbjct: 8   CLCKAIHLKAIIEEPKLS---CCHCETCRIWCSSP 39


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 698 NIHRKKIVAFLAKDKHNSMNDGIVLTITTHAGSL 597
           +IH+K +V  + K    S+ DG+      HA SL
Sbjct: 184 SIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,026
Number of Sequences: 5004
Number of extensions: 55711
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)